TCONS_00048048-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048048-protein
Unique NameTCONS_00048048-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length265

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048048-protein ID=TCONS_00048048-protein|Name=TCONS_00048048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MIDSTTTPVNMECLHKQLLEEQQENKELKSRVDELQMALESADINYEMFK
QRCMIQFENFQNEMANMKKDFEQMLEASRQMVQPQRQDLRKLHKCAEENH
RNINDVDLRLQLLENSRMNGKLLWKIDDFRQRRQQTLVGDISALHSAPCY
TSEYGYKFCLRAYLNGDGVGEGTHLSLFLVLMKSDYDNILEWPFQKKIKF
TLINQQNRSKDHIEEINPKKGSESFQKPKKEMNIASGCPMFIELNRLDID
GFLKDDCLFFEVDVE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030574XLOC_030574Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048048TCONS_00048048Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 11..77
NoneNo IPR availableCDDcd00270MATH_TRAF_Ccoord: 120..265
e-value: 2.72666E-62
score: 193.978
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 124..247
e-value: 2.3E-10
score: 50.5
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 119..264
score: 19.496
IPR008974TRAF-likeGENE3D2.60.210.10coord: 99..265
e-value: 1.5E-37
score: 128.5
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 119..264

Blast
[Close]
BLAST of TCONS_00048048-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.118e-52
Identity = 75/163 (46.01%), Postives = 113/163 (69.33%), Query Frame = 0 
Query:  103 INDVDLRLQLLENSRMNGKLLWKIDDFRQRRQQTLVGDISALHSAPCYTSEYGYKFCLRAYLNGDGVGEGTHLSLFLVLMKSDYDNILEWPFQKKIKFTLINQQNRSKDHIEEINPKKGSESFQKPKKEMNIASGCPMFIELNRLDIDGFLKDDCLFFEVDVE 265
            + D+DLR Q+LE +  NG L+WKI D+++R+Q+ ++G   +L+S P YT  +GYK C R YLNGDG+G+GTHLSLF V+M+ +YD +L WPF++K+   L++Q +  +   +   P   S SF+KP  EMNIASGCP+F+    L+   ++KDD +F +V V+
Sbjct:  399 LADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
BLAST of TCONS_00048048-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF36.118e-5246.01TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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