TCONS_00048221-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048221-protein
Unique NameTCONS_00048221-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1410

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048221-protein ID=TCONS_00048221-protein|Name=TCONS_00048221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1410bp
FSKNSKKTIPKIRPDVPFKSVSYELNKQADPFSGINNLQDVWETNDGECN
VMIESKYDKIYEKIDLTLLNRLLRLIVDHNIADYMTAKNNIVINYKDMNH
TNSYGIIRGLQFASFIVQYYGLVIDLLVLGLRRASEMAGPPQMPNDFLTF
QSTEVETAHPIRLYSRYVDRIHVFFRFSADGAKDLIQRYLTEHPDPNNEN
IVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRIPRSVSTLRWEDSF
VSVYSKDNPNLLFNMCGFECRLLPKIRMTSEEFTHRDGVWNLQNEVTKER
TAQCFLRVDNDSMSKFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYF
RESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGG
LGMLSMGHVLIPQSDLRWSKQTDAGITHFRSGMSHDEDQVIPNLYRYVQP
WESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQ
KDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDM
IQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRS
GLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLI
QIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNS
SCADILLFAAYKWNVSKPSLLADSKDTMDNTTTQKYWVDVQLRWGDYDSH
DVERYARAKYLDYTTDNMSIYPSPTGCLVGIDLAYNLHSAFGNWVPGMKP
LIQQAMGKIMKANPALYVLRERVRKALQLYSSEPTEPYLSSQNYGELFSN
QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHT
SVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEV
HLLDFPNIVIKGSELQLPFQACLKVEKLGDLILKATEPQMVLFNLYDDWL
KTISSYTAFSRLILILRALHVNTDRTKVVLKPDKTTITEPHHIWPTLTDE
EWVRVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQ
QIAEIEKQSKDQSQLTATTTKTTNIHGDEIIVSTTSNYERSTFSSKTEWR
VRAISATNLHLRTNHIYVSSDDIKETGFTYILPKNVLKKFIVISDLRTQI
AGYMYGVSPADNPQVKEIRCIVLVPQWGTHQTVHLPSHLPQHEFLKEMEP
LGWIHTQPNELPQLSPQDVTTHAKIMSDNPSWDGEKTIVITCSFTPGSCS
LTAYKLTPSGFEWGRNNKDTGNNPRGYLPSHYEKVQMLLSDRFLGFFMVP
AQGPWNFNFMGVRHSTNMRYELQLANPKEFYHEVHRPSHFLNFSSIEDTE
QAADREDLFA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030685XLOC_030685Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048221TCONS_00048221Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000555JAMM/MPN+_dom
IPR021983PRP8_domainIV
IPR019582RRM_spliceosomal_PrP8
IPR019580Prp8_U6-snRNA-bd
IPR012984PROCT
IPR019581Prp8_U5-snRNA-bd
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003723RNA binding
GO:0017070U6 snRNA binding
GO:0030623U5 snRNA binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0030623 U5 snRNA binding
molecular_function GO:0017070 U6 snRNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 467..487
NoneNo IPR availableCDDcd08056MPN_PRP8coord: 1143..1393
e-value: 2.26705E-180
score: 536.825
IPR000555JAB1/MPN/MOV34 metalloenzyme domainSMARTSM00232pad1_6coord: 1175..1309
e-value: 5.5E-28
score: 109.0
IPR000555JAB1/MPN/MOV34 metalloenzyme domainPFAMPF01398JABcoord: 1179..1280
e-value: 2.9E-11
score: 43.3
IPR021983PRP8 domain IV corePFAMPF12134PRP8_domainIVcoord: 836..1065
e-value: 4.3E-130
score: 432.1
IPR021983PRP8 domain IV coreCDDcd13838RNase_H_like_Prp8_IVcoord: 842..1092
e-value: 0.0
score: 565.435
IPR019582RNA recognition motif, spliceosomal PrP8PFAMPF10598RRM_4coord: 62..152
e-value: 5.6E-48
score: 161.1
IPR019580Pre-mRNA-processing-splicing factor 8, U6-snRNA-bindingPFAMPF10596U6-snRNA_bdgcoord: 518..676
e-value: 5.5E-93
score: 309.0
IPR012984PROCT domainPFAMPF08084PROCTcoord: 1288..1407
e-value: 5.5E-54
score: 181.2
IPR019581Pre-mRNA-processing-splicing factor 8, U5-snRNA-bindingPFAMPF10597U5_2-snRNA_bdgcoord: 287..419
e-value: 1.8E-73
score: 244.9
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 839..1091
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 73..329

Blast
[Close]
BLAST of TCONS_00048221-protein vs. Swiss-Prot (Human)
Match: PRP8 (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2)

HSP 1 Score: 2664.41 bits (6905), Expect = 0.000e+0
Identity = 1263/1378 (91.65%), Postives = 1329/1378 (96.44%), Query Frame = 0 
Query:   34 GINNLQDVWETNDGECNVMIESKYDKIYEKIDLTLLNRLLRLIVDHNIADYMTAKNNIVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVIDLLVLGLRRASEMAGPPQMPNDFLTFQSTEVETAHPIRLYSRYVDRIHVFFRFSADGAKDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRIPRSVSTLRWEDSFVSVYSKDNPNLLFNMCGFECRLLPKIRMTSEEFTHRDGVWNLQNEVTKERTAQCFLRVDNDSMSKFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDAGITHFRSGMSHDEDQVIPNLYRYVQPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNVSKPSLLADSKDTMDNTTTQKYWVDVQLRWGDYDSHDVERYARAKYLDYTTDNMSIYPSPTGCLVGIDLAYNLHSAFGNWVPGMKPLIQQAMGKIMKANPALYVLRERVRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKLGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNTDRTKVVLKPDKTTITEPHHIWPTLTDEEWVRVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQSKDQSQLTATTTKTTNIHGDEIIVSTTSNYERSTFSSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGFTYILPKNVLKKFIVISDLRTQIAGYMYGVSPADNPQVKEIRCIVLVPQWGTHQTVHLPSHLPQHEFLKEMEPLGWIHTQPNELPQLSPQDVTTHAKIMSDNPSWDGEKTIVITCSFTPGSCSLTAYKLTPSGFEWGRNNKDTGNNPRGYLPSHYEKVQMLLSDRFLGFFMVPAQGPWNFNFMGVRHSTNMRYELQLANPKEFYHEVHRPSHFLNFSSIEDTE-QAADREDLFA 1410
            GINNLQDVWET++GECNVM+ES+++K+YEKIDLTLLNRLLRLIVDHNIADYMTAKNN+VINYKDMNHTNSYGIIRGLQFASFIVQYYGLV+DLLVLGL RASEMAGPPQMPNDFL+FQ    E AHPIRL+ RY+DRIH+FFRF+AD A+DLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNR+PRSV+T++WE+SFVSVYSKDNPNLLFNMCGFECR+LPK R + EEFTH+DGVWNLQNEVTKERTAQCFLRVD++SM +FHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFRE+VVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTD GITHFRSGMSH+EDQ+IPNLYRY+QPWESEFIDSQRVWAEYALKRQEA AQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHES+VMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFA+YKWNVS+PSLLADSKD MD+TTTQKYW+D+QLRWGDYDSHD+ERYARAK+LDYTTDNMSIYPSPTG L+ IDLAYNLHSA+GNW PG KPLIQQAM KIMKANPALYVLRER+RK LQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEK GDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVN DR KV+LKPDKTTITEPHHIWPTLTDEEW++VEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPS QRQQIAEIEKQ+K+QSQLTAT T+T N HGDEII STTSNYE  TFSSKTEWRVRAISA NLHLRTNHIYVSSDDIKETG+TYILPKNVLKKFI ISDLR QIAGY+YGVSP DNPQVKEIRCIV+VPQWGTHQTVHLP  LPQHE+LKEMEPLGWIHTQPNE PQLSPQDVTTHAKIM+DNPSWDGEKTI+ITCSFTPGSC+LTAYKLTPSG+EWGR N D GNNP+GYLPSHYE+VQMLLSDRFLGFFMVPAQ  WN+NFMGVRH  NM+YELQLANPKEFYHEVHRPSHFLNF+ +++ E  +ADREDL+A
Sbjct:  958 GINNLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATEAAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335
The following BLAST results are available for this feature:
BLAST of TCONS_00048221-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRP80.000e+091.65Pre-mRNA-processing-splicing factor 8 OS=Homo sapi... [more]
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