TCONS_00048303-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048303-protein
Unique NameTCONS_00048303-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048303-protein ID=TCONS_00048303-protein|Name=TCONS_00048303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MSKVIVWEYETDMHGLFAPYEDNISNSIEDAYVKNPQDQNVDLGKIDHLL
NNYEIEFNAMMQTNTKSGRQRQIQRQTYSTNSTIGSGVSWQWMTEKGWVV
YDIEAIEAIERAYNQGSKTCDLGLLSFGLPNLVCIDKGYQKNKQSGFVRP
IQRKVVDYKAVSGTRMKSSGTSSSTLTSAHAATNNLPSLNQPNSTTSHYQ
SLNGGAGSNTRPYSTQQPKSLPVSSGSSKSKSAGSISLGASSSTASHKSV
GRRSSSDDKASHKKRKSNSAKPINPILDPFCSLSQPDDKNEQCAICLSEL
EDDNMTSLPENVLQLKICKHKFHESCLEALYKSSHNQQHCLRCPICKQIH
GVLKGDQPPGRMTHRMDRHQDCEGYRGDGLIIITYNINHGIQGPEHPNPG
HPYYTGNFPRTAYLPANKKGTKCLKLLEVAFERRLIFTVGTSATTGHDNC
VTWTNIHHKTSSRNDGSGHGYPDPGYMDNLIEELKNVGVTDADIKP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030746XLOC_030746Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048303TCONS_00048303Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR018123WWE-dom_subgr
IPR004170WWE-dom
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 293..346
e-value: 2.7E-5
score: 33.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 292..347
e-value: 2.2E-7
score: 31.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 293..347
score: 11.324
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 292..348
e-value: 1.48431E-8
score: 50.1368
IPR018123WWE domain, subgroupSMARTSM00678deltexcoord: 85..160
e-value: 0.0033
score: 19.9
coord: 2..83
e-value: 2.5E-8
score: 43.7
IPR004170WWE domainPFAMPF02825WWEcoord: 88..153
e-value: 1.9E-8
score: 34.7
coord: 5..75
e-value: 2.8E-13
score: 50.1
IPR004170WWE domainPROSITEPS50918WWEcoord: 76..153
score: 14.722
IPR004170WWE domainPROSITEPS50918WWEcoord: 1..75
score: 17.658
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 286..352
e-value: 6.8E-11
score: 41.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..273
NoneNo IPR availableCDDcd09633Deltex_Ccoord: 355..488
e-value: 3.025E-66
score: 210.891
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 288..365
NoneNo IPR availableSUPERFAMILY117839WWE domaincoord: 2..85
NoneNo IPR availableSUPERFAMILY117839WWE domaincoord: 80..159

Blast
[Close]
BLAST of TCONS_00048303-protein vs. Swiss-Prot (Human)
Match: DTX2 (Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens GN=DTX2 PE=1 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 1.340e-52
Identity = 110/264 (41.67%), Postives = 144/264 (54.55%), Query Frame = 0 
Query:  243 STASHKSVGRRSSSDDKASHKKRKSNSAKPINPILDPFCSLSQPDDKNEQCAICLSEL----------EDDNMTSLPENVLQLKICKHKFHESCLEALYKSSHNQQHCLRCPICKQIHGVLKGDQPPGRM-----THRMDRHQDCEGYRGDGLIIITYNINHGIQGPEHPNPGHPYYTGNFPRTAYLPANKKGTKCLKLLEVAFERRLIFTVGTSATTGHDNCVTWTNIHHKTSSRNDGSGHGYPDPGYMDNLIEELKNVGVTD 491
            ++ SH SV R      K +  K +    + I    +    L  P D  E C IC+ +L          +   + SL   V  L  C H FH  CL A+Y  + N+   L+CP CK I+G   G QP G+M        +  H+DC      G I+I Y+I HGIQGPEHPNPG P+    FPR  YLP N +G K L+LL+VA++RRLIFTVGTS+TTG  + V W  IHHKT    + +GHGYPDP Y+ N++ EL   GVT+
Sbjct:  367 ASKSHGSVKRLRKMSVKGATPKPEPEPEQVIKNYTE---ELKVPPD--EDCIICMEKLSTASGYSDVTDSKAIGSL--AVGHLTKCSHAFHLLCLLAMY-CNGNKDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDC------GTILIVYSIPHGIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGETDTVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTE 616
The following BLAST results are available for this feature:
BLAST of TCONS_00048303-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DTX21.340e-5241.67Probable E3 ubiquitin-protein ligase DTX2 OS=Homo ... [more]
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