TCONS_00048314-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00048314-protein
Unique Name	TCONS_00048314-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	631

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00048314-protein ID=TCONS_00048314-protein|Name=TCONS_00048314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp
MPSSPDDEKSQFWLINGGGGNEGSGEKQEAPKRDLWGSQKEFLLSCVGYT
VGLGNIWRFPYLAYQSGGGAFLIPYIVMLITCGMPMYIMEVALGQYIAEG
PIQVWRIVCPLFRGIGYSMLMVSFLVGVYYNVIIAWVLFYLFASFRADIP
WRHCDPTWATKYCLEGPRPSGNGSLFNTTTGMLSCLKGFDLSTKLVNGSS
VMYCKPYEKWNYPSIEYFSNYVLEQTNSIDDTGKIRWQLVLCLLLSWMVV
YFCMWKGVKSAGKVVYFTATFPYVVLLILLVRGLTLPNAIEGVTYYIKPD
FEKIAKPEVWAAAGGQLFYSLGPAFGSLLSFASYNKFNNNCIRDAMFISA
LDACTSSLAGLVIFSVLGSMAKSLNVDVKDVATHGPGLAFMVYPEGISQM
PLSTFWSIIFFFMLFTLGLDSQFGMMECIVTNLVDEYPTYLRKRKELFIF
GVCVTCFLFGFTIITQAGIYWFTIFDYQSAGVCLIFVAFVEIIVVGWFFD
ADRLLKMVEQMVGYKPSRWWRLCWKFISPVIMGLVLIFKLTQWEGISYGT
YKFPPWAEAIGWMLALATAIMIPLFAVITLFKADGNSLWQKIKTSVRPKI
EILNKKGAENGVEESFPLGPNKNTYEISADA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030751	XLOC_030751	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00048314	TCONS_00048314	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000175	Na/ntran_symport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005328	neurotransmitter:sodium symporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006836	neurotransmitter transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006836	neurotransmitter transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005328	neurotransmitter:sodium symporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000175	Sodium:neurotransmitter symporter	PRINTS	PR00176	NANEUSMPORT	coord: 114..140 score: 46.02 coord: 41..62 score: 70.49 coord: 264..281 score: 70.77 coord: 481..501 score: 33.49 coord: 400..419 score: 59.51 coord: 70..89 score: 47.46 coord: 346..366 score: 38.95 coord: 521..541 score: 33.18
IPR000175	Sodium:neurotransmitter symporter	PFAM	PF00209	SNF	coord: 33..582 e-value: 6.2E-205 score: 681.7
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS00610	NA_NEUROTRAN_SYMP_1	coord: 57..71
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS50267	NA_NEUROTRAN_SYMP_3	coord: 32..585 score: 105.842
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	SUPERFAMILY	161070	SNF-like	coord: 212..581 coord: 33..163

Blast

[Close]

BLAST of TCONS_00048314-protein vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 523.087 bits (1346), Expect = 4.674e-180
Identity = 252/590 (42.71%), Postives = 375/590 (63.56%), Query Frame = 0

Query:   26 EKQEAPKRDLWGSQKEFLLSCVGYTVGLGNIWRFPYLAYQSGGGAFLIPYIVMLITCGMPMYIMEVALGQYIAEGPIQVWRIVCPLFRGIGYSMLMVSFLVGVYYNVIIAWVLFYLFASFRADIPWRHCDPTWATKYCLEGPRPSGNGSLFNTTTGMLSCLKGFDLSTKLVNGSSVMYCKPYEKWNYPSIEYFSNYVLEQTNSIDDTGKIRWQLVLCLLLSWMVVYFCMWKGVKSAGKVVYFTATFPYVVLLILLVRGLTLPNAIEGVTYYIKPDFEKIAKPEVWAAAGGQLFYSLGPAFGSLLSFASYNKFNNNCIRDAMFISALDACTSSLAGLVIFSVLGSMAKSLNVDVKDVATHGPGLAFMVYPEGISQMPLSTFWSIIFFFMLFTLGLDSQFGMMECIVTNLVDEYPTYLRKRKELFIFGVCVTCFLFGFTIITQAGIYWFTIFDYQSA-GVCLIFVAFVEIIVVGWFFDADRLLKMVEQMVGYKPSRWWRLCWKFISPVIMGLVLIFKLTQWEGISYGTYKFPPWAEAIGWMLALATAIMIPLFAVITLFKADGNSLWQKIKTSVRPKIEILNKKGAENGVEE 614
            +  + P RD W  + +FL+SCVGY +GLGN+WRFPYL  ++GGGAFLIPY + LI  G+P++++E +LGQY + G + VW++  P+F+G+G +  ++SF + +YY VII+W ++YL+ SF   +PW+ CD  W T  C        N S+ NTT                 N +S +            +E++   + + T+ +D  G+IRW L + L ++W++VYFC+WKGV   GKVVYF+AT+PY++L+IL  RG+TLP A EG+ +YI P+F K++  EVW  A  Q+F+S G   GSL++  SYN F+NN  RD++ +  +++CTS  AG VIFS++G MA      + DVA  GPGLAF+ YPE ++Q+P+S  W+I+FF ML  LG+DSQF  +E  +T LVDEYP  LR R+ELFI  VC+  +L G + ITQ GIY F +FDY SA G+ L+F+ F E + + WF+  +R    +++MVG +P  WW+LCW F +P+I+  V IF   Q   ++ G Y FP W + +GW++AL++ ++IP +         G SL Q+I+  V+P  +I+     ENG E+
Sbjct:   37 KAADLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKL-APMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFS------NYSMVNTT-----------------NMTSAV------------VEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMGNYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKG-SLKQRIQVMVQPSEDIVRP---ENGPEQ 586

The following BLAST results are available for this feature:

BLAST of TCONS_00048314-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00048314-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC6A1	4.674e-180	42.71	Sodium- and chloride-dependent GABA transporter 1 ...	[more]

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TCONS_00048314-protein (polypeptide) - C. hemisphaerica