TCONS_00048316-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00048316-protein
Unique Name	TCONS_00048316-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	808

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00048316-protein ID=TCONS_00048316-protein|Name=TCONS_00048316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=808bp
VKFRQLTKRKIMRIMYCLLLVITQNYYACTSKQNIYFGAFLSNIVKDDLC
FKAAIDVAVRLINEDDTILKDFKLKVKYFDNLGMSGFGMTEFFHVYQMKE
TLQFMLGPFTEQFAEPMRLLTDRINLPMVEDNGKTFQSQRKALVALLNHF
GWKKLHMLYDIAYIHFVQNANQLKKLLKSEEDHSIDIQGFSSVPYFNVEK
QIQNIKKHDGRIIFIDMDRWTAPTIFCDIYLQNMSYPRHIFISGNIHDLE
NNWHEMTDDNTRRCTSQQILKAAEGFLFLKRSDFQINGGPRRAKKTRGEI
WELIKRYKQRTWNHYINKYVKKKKFREEWDKITYNKGSGRVFDLVYRAAL
ALDKLIKQHGAEKVLMKSYHDTEKYSMITKAIKTMEFYGVSGKQRDMDLG
HDLDHVIHQYRNGSFVEVGYYTTTTNTISFHTKLFNETRPPRDGVLLQEV
FLEYKWNILLTLWIGAFSGILIALSLLFLNWSYRHKRVIKMSSPKVNNLI
ILGCISCYLSIIFFGLDSRFTSKDNSNTMCTATISSLSIGFTLSFGGLFS
KTWRVYRIFAAARTNSRIAVRDVQLYIMIVVLLSIDISILLCFITFNPFH
LEGFQLSQKFYPQEDRMEIQIHQLCSCSNQTAFVATLVSFKVLLLIFGLF
MAWETRHVHIPVLNDSKHIGLAVYFVAFVSTIGAICSTALSTTGYFEESY
LVIGLSIFLCTTSTLLLVFLGKVSLIFDKTGRDRTHSTSSIISSSSYSYQ
ETPTPPSKSLPTTNSTGNSSVTFAAKFSAFSSKKRKDKYEKRLRSESLLS
REDTSVLL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030753	XLOC_030753	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00048316	TCONS_00048316	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001828	ANF_lig-bd_rcpt
IPR017978	GPCR_3_C
IPR028082	Peripla_BP_I

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01176	GABABRECEPTR	coord: 549..566 score: 30.81 coord: 497..518 score: 41.32 coord: 664..687 score: 40.53 coord: 194..217 score: 24.24 coord: 224..247 score: 14.02 coord: 530..549 score: 40.0 coord: 458..481 score: 21.59
None	No IPR available	GENE3D	3.40.50.2300		coord: 137..450 e-value: 2.5E-19 score: 69.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 746..766
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 53..393 e-value: 6.5E-18 score: 64.8
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 470..723 e-value: 3.8E-45 score: 154.4
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 465..733 score: 20.991
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 52..443

Blast

[Close]

BLAST of TCONS_00048316-protein vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.160e-72
Identity = 195/704 (27.70%), Postives = 342/704 (48.58%), Query Frame = 0

Query:   53 AAIDVAVRLINEDDTILKDFKLKVKYFDNLGMSGFGMTEFFHVYQMKETLQFMLGPFTEQ------------------FAEPMRLLTDRINLPMVEDNGKTFQSQRKALVALLNHFGWKKLHML-YDIAYIHFVQNANQLKKLLKSEEDHSIDIQGFSSVPYFNVEKQIQNIKKHDGRIIFIDMDRWTAPTIFCDIYLQNMSYPRHIFISGNIHDLENNWHEM--TDDNTRRCTSQQILKAAEGFLFLKRSDFQINGGPRRAKKTRGEIWELIKRYKQRTWNHYINKYVKKKKFREEWDKITYNKGSGRVFDLVYRAALALDKLIKQHGA----EKVLMKSYHDTEKYSMITKAIKTMEFYGVSGKQRDMDLGHDLDHV-IHQYRNGSFVEVGYYTTTTNTISF--HTKLFNETRPPRDGVLLQEVFLEYKWNILLTLWIGAFSGILIALSLLFLNWSYRHKRVIKMSSPKVNNLIILGCISCYLSIIFFGLDSRFTSKDNSNTMCTATISSLSIGFTLSFGGLFSKTWRVYRIFAAARTNSRIAVRDVQLYIMIVVLLSIDISILLCFITFNPFH--LEGFQLSQKFYPQEDRMEIQIHQL---CSCSNQTAFVATLVSFKVLLLIFGLFMAWETRHVHIPVLNDSKHIGLAVYFVAFVSTIGAICSTALSTTGYFEESYLVIGLSIFLCTTSTLLLVFLGKV 723
             A+++A+  I  ++++L+ + L ++ +D    +  G+  F+   +       + G                       FA    +L D+   P       +  +   A++ LL H+ WK++  L  D+    F +  N L  +L  E+    D + FS+ P  +V+K    +K +D RII    D+  A  +FC  Y +NM   ++ +I    +  E +W E   T+ N+ RC  + +L A EG++ +   DF+    P  +K+        IK    +T   Y  +Y  K+        +  +K  G  +D ++  A  L + ++   A    +++   +Y D     +I  A+    F+GV+G Q     G  +  +   Q+++   V+VG Y    +T+     T  F  + PP+D  ++ E   +    +   L      G+++A + LF N   R++++IKMSSP +NNLIILG +  Y SI  FGLD  F S+    T+CT     L++G+T +FG +F+KTWRV+ IF   +   +I ++D +L +++  +L ID+ IL+C+   +P    +E + +     P     +I I  L   C  ++ T ++  + ++K LL++FG F+AWETR+V IP LNDSK+IG++VY V  +  IGA  + +  T       + ++ L I  C+T TL LVF+ K+
Sbjct:   79 PAVELAIEQI-RNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQ--RFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKK----LKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWY--EPSWWEQVHTEANSSRCLRKNLLAAMEGYIGV---DFE----PLSSKQ--------IKTISGKTPQQYEREYNNKR------SGVGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTG-QVVFRNGERMGTIKFTQFQDSREVKVGEYNAVADTLEIINDTIRFQGSEPPKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVKMKKKI-IKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSME----PDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGA--AVSFLTRDQPNVQFCIVALVIIFCSTITLCLVFVPKL 744

The following BLAST results are available for this feature:

BLAST of TCONS_00048316-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00048316-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GABR2	7.160e-72	27.70	Gamma-aminobutyric acid type B receptor subunit 2 ...	[more]

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TCONS_00048316-protein (polypeptide) - C. hemisphaerica