TCONS_00048373-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00048373-protein
Unique Name	TCONS_00048373-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	618

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00048373-protein ID=TCONS_00048373-protein|Name=TCONS_00048373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=618bp
MFIVLESENNKNLSYIKMADEKEDYEKNPLVKNGKDELELREKQPPSYQS
VQRPSSPADEARRVLRGPLAPVNNFLNMLEDNTRNFIQKESQTVKIVAAV
IFLILYIIYFCFAVTLDAERAKDLIYVTVFGFFCLFYWLIKKFFGRVIWK
SCLKPIVAFFEAKRKIFTWILSLAFVGFLIFWLCWDTRKDPGRLISLGGL
LVYILIGFLFSKQRDRIRWRPVIWGFALQFIFGLLILRTDIGLNVFKWLG
DRVTIFLGFSKAGIEFLFRGLDQFGLAILPIIVYFSAVTYVLYYLGWMQV
FIKKVAWILQVTMGTSPAESVNAAGNIFIGQTEAPLLIRPFLEGMTASEL
HAVMTGGFATIAGSVLATYILFGVSASHLLSASVMSAPAALAMSKLMYPE
TEEPEFTEVDKIEIDGTEETNVFEALAVGASMSIGLVANIGVMIIAFLSV
LALFDGLLGWFGGMVGLHELSFEFICSYVFMPFAFIMGVDYKDSFEVAKM
LGIKTFLNEFIAYEKLGDIIKNRVLERGGLTMSIRSEVIATYALCGFANF
GSMGVQIGGISSLAPSKRTVLSQVVLRALVAGTLACFMTACVAGILYDES
RYDVSIKIPTNGTNTTLF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030775	XLOC_030775	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00048373	TCONS_00048373	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002668	CNT_N_dom
IPR018270	C_nuclsd_transpt_met_bac
IPR011657	CNT_C_dom
IPR011642	Gate_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005337	nucleoside transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:1901642	nucleoside transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901642	nucleoside transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005337	nucleoside transmembrane transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002668	Concentrative nucleoside transporter N-terminal domain	PFAM	PF01773	Nucleos_tra2_N	coord: 199..270 e-value: 3.1E-24 score: 85.3
IPR018270	Concentrative nucleoside transporter, metazoan/bacterial	TIGRFAM	TIGR00804	TIGR00804	coord: 194..596 e-value: 2.0E-146 score: 486.1
IPR011657	Concentrative nucleoside transporter C-terminal domain	PFAM	PF07662	Nucleos_tra2_C	coord: 378..596 e-value: 7.0E-76 score: 254.7
IPR011642	Nucleoside transporter/FeoB GTPase, Gate domain	PFAM	PF07670	Gate	coord: 278..370 e-value: 1.4E-6 score: 28.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..60

Blast

[Close]

BLAST of TCONS_00048373-protein vs. Swiss-Prot (Human)
Match: S28A3 (Solute carrier family 28 member 3 OS=Homo sapiens GN=SLC28A3 PE=1 SV=1)

HSP 1 Score: 469.159 bits (1206), Expect = 6.759e-158
Identity = 263/529 (49.72%), Postives = 357/529 (67.49%), Query Frame = 0

Query:   81 DNTRNFIQKESQTVKIVAAVIFLILYIIYFCFAVTLDAERAKDLIYVTVFG-FFCLFYWLIKKFFGRVIWKSCLKPIVAFFEAKRKIFTWILSLAFVGFLIFWLCWDTRK-DPGRLISLGGLLVYILIGFLFSKQRDRIRWRPVIWGFALQFIFGLLILRTDIGLNVFKWLGDRVTIFLGFSKAGIEFLF--RGLDQF-GLAILPIIVYFSAVTYVLYYLGWMQVFIKKVAWILQVTMGTSPAESVNAAGNIFIGQTEAPLLIRPFLEGMTASELHAVMTGGFATIAGSVLATYILFGVSASHLLSASVMSAPAALAMSKLMYPETEEPEFTEVDKIEIDGTEETNVFEALAVGASMSIGLVANIGVMIIAFLSVLALFDGLLGWFGGMVGLHELSFEFICSYVFMPFAFIMGVDYKDSFEVAKMLGIKTFLNEFIAYEKLGDIIKNRVLERGGLT--------MSIRSEVIATYALCGFANFGSMGVQIGGISSLAPSKRTVLSQVVLRALVAGTLACFMTACVAGIL 596
            D    F +K   T++ +   I L  Y++    A  L+  RA  L  +TV   FF ++  L+ K+  R+     L P      +      W++  + V  +IFWL +DT K    +L+S GGL++YI++ FLFSK   R+ WRPV+WG  LQF+ GLLILRTD G   F WLG +V  FL ++ AG  F+F  +  D F    +LPI+V+FS V  +LYYLG MQ  I+KV WI+ VT G+SP ESV A+GNIF+GQTE+PLL+RP+L  +T SELHA+MT GF+TIAGSVL  YI FGV +SHLL+ASVMSAPA+LA +KL +PETE+P+ T  + ++++  +  N+ EA   GAS SI LVANI V +IAFL++L+  +  L WFG M    +LSFE ICSY+FMPF+F+MGV+++DSF VA+++G KTF NEF+AYE L   I  R  + GG          +SIRSE+IATYALCGFAN GS+G+ IGG++S+APS++  ++   +RAL+AGT+ACFMTAC+AGIL
Sbjct:   88 DTVCGFCRKHKTTLRHIIWGILLAGYLVMVISACVLNFHRALPLFVITVAAIFFVVWDHLMAKYEHRI--DEMLSPGRRLLNSHWFWLKWVIWSSLVLAVIFWLAFDTAKLGQQQLVSFGGLIMYIVLLFLFSKYPTRVYWRPVLWGIGLQFLLGLLILRTDPGFIAFDWLGRQVQTFLEYTDAGASFVFGEKYKDHFFAFKVLPIVVFFSTVMSMLYYLGLMQWIIRKVGWIMLVTTGSSPIESVVASGNIFVGQTESPLLVRPYLPYITKSELHAIMTAGFSTIAGSVLGAYISFGVPSSHLLTASVMSAPASLAAAKLFWPETEKPKITLKNAMKMESGDSGNLLEAATQGASSSISLVANIAVNLIAFLALLSFMNSALSWFGNMFDYPQLSFELICSYIFMPFSFMMGVEWQDSFMVARLIGYKTFFNEFVAYEHLSKWIHLR--KEGGPKFVNGVQQYISIRSEIIATYALCGFANIGSLGIVIGGLTSMAPSRKRDIASGAVRALIAGTVACFMTACIAGIL 612

The following BLAST results are available for this feature:

BLAST of TCONS_00048373-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00048373-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S28A3	6.759e-158	49.72	Solute carrier family 28 member 3 OS=Homo sapiens ...	[more]

You are here

TCONS_00048373-protein (polypeptide) - C. hemisphaerica