TCONS_00048381-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048381-protein
Unique NameTCONS_00048381-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1018

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048381-protein ID=TCONS_00048381-protein|Name=TCONS_00048381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1018bp
MSSVLQCPITALKCFNNLLLTGQKSKLLLYNVEDHNLLVTKNIFQRNSVH
KFCEITPGEFLVIGGKSIRRIKIDQTSKETCSVHFVSKEKEFKVWVWDGI
HLEGSKFLLISIHNTTFVWDSELDETLPVSSCQEQCILYSARLQRTENEI
LVAAGTVFNQILLWKTDVDVKNHVFVQDMKRFCGHEGVIFSIRFHPRSQE
ILSVSDDRSIRIWDTETTECLQVLYGHTARVWDAMFVANGNIVSIGEDAT
CIVWDRSNVAILKKHKGHKGKSIWSMEIDQGSIYTGGGDGGIRKWPLDSA
AQPIKTKECMLSQELRRNKGDKEDDFPRIVKFITPTRLLVFTNNGFLLSF
DHNKEKSWVVLHEDSSYYTYCVLDCKEDVVAFGNLKGMVKLCYLGCPRDV
LSEQIFGTGKVYNLLILNSENQKQLLACGPEGELKLYTIEFSNQIPTALK
LLSSFILPHSKQRWVTNAILYNNPESGFEQWKLVCGDRRGSLHLFDGSSK
APLDSALGVHGKTGVTSVVQHGNHLFTTGRDGNFRKYHVTGNKIVLVDKQ
KVCKGLDWIEGIWFHEDDVIVYGFYLQSYFGLWSYEKKEILLKIQCGGGY
RSWDVSFPNQDTKTLQLAYLKGPVVNIASCQWNEEEQSCVFKEGLHGKEV
VCAKLLGYRYVSEGREWLMATGSEDTTINFVIYKENTNTTELIHTAVGHI
GGVKDITFMPSSQNSSRLSGNLISCGSRTSLKKWYLDCPSFISRSTILKT
CFTNGDHEASLTPSTILPPFNKNKTDLSCCLATEIFNPEMNPKQLKLRTG
EFIDDMRYMSCDVWPLLDNVNENVSEGTFVCACACSDGAVRIYLFDGHGI
EMISLLGDKKHCFQTVKWLHVSRDHIVMATSTDGHLSMWNLEKIFETYRQ
KLIDRNQENQNEITVLGEKVTSNHVNKNRFKFHELEEAVLLNTDIVSGEA
LLCFNHKIHQSGINSIDVVVNSHANKEITSLIVATGGDDNALSITNIQVD
LSRDLKMTSLKMVETKTA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030779XLOC_030779Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048381TCONS_00048381Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 258..296
e-value: 4.7
score: 12.8
coord: 500..538
e-value: 78.0
score: 5.0
coord: 947..996
e-value: 60.0
score: 5.8
coord: 175..214
e-value: 1.6E-6
score: 37.7
coord: 217..255
e-value: 9.2E-6
score: 35.2
coord: 397..438
e-value: 470.0
score: 0.1
coord: 689..735
e-value: 2.2
score: 14.8
coord: 856..890
e-value: 16.0
score: 9.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 180..214
e-value: 1.3E-4
score: 22.6
coord: 219..255
e-value: 0.21
score: 12.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 182..223
score: 15.588
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 630..795
e-value: 4.4E-5
score: 22.0
coord: 819..1010
e-value: 1.8E-6
score: 26.6
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 315..629
e-value: 1.5E-13
score: 49.9
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 2..247
e-value: 1.3E-25
score: 89.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 248..314
e-value: 3.5E-7
score: 28.9
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 201..215
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 182..305
score: 20.382
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 151..437
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 948..994
coord: 828..893
coord: 639..764
coord: 469..545

Blast
[Close]
BLAST of TCONS_00048381-protein vs. Swiss-Prot (Human)
Match: WDR6 (WD repeat-containing protein 6 OS=Homo sapiens GN=WDR6 PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 8.343e-83
Identity = 267/1001 (26.67%), Postives = 431/1001 (43.06%), Query Frame = 0 
Query:    2 SSVLQCPITALKCFNNLLLTGQKSKLLLYNVE--DHNLLVTK--NIFQRNSVHKFCEITP---------GEFLVIGGKSIRRIKIDQTSKETCSVHFVSKEKEFKVWVWDGIHLEGSKFLLISIHNTTFVWDSELDETLPVSSCQEQCILYSARL-QRTENEILVAAGTVFNQILLWKTDVDVKNHVFVQDMKRFCGHEGVIFSIRFHPRSQEILSVSDDRSIRIWDT-------ETTECLQVLYGHTARVWDAMFVANGNIVSIGEDATCIVWDRSNVAILKKHKGHKGKSIWSMEID--QGSIYTGGGDGGIRKWPLDSAAQPIKTKECMLSQELRRNKGDKEDDFPRIVKFITPT---RLLVFTNNGFLLSFDHNKEKSWVVLHEDSSYYTYCVLDCKEDVVAFG-----NLKGMVKLCYLGCPRDVLSEQIFGTGKVYNL-LILNSENQKQLLACGPEGELKLYTIEFSNQIPTA-LKLLSSFILPHSKQRWVTNAILYNNPESGFEQWKLVCGDRRGSLHLFDG----------------------------------SSKAPLDSALGVHGKTGVTSVVQHGNHLFTTGRDGNFRKYHVTGNKIVLVDKQKVCKGLDWIEGIWFHED-DVIVYGFYLQSYFGLWSYEKKEILLKIQCGGGYRSWDVSFPNQDTK-TLQLAYLKGPVVNIASCQWNEEEQSCVFKEGLHGKEVVCAK-----LLGYRY-------------VSEGREW--LMATGSEDTTINFVIYKENTNTTELIHTAVGHIGGVKDITF----MPSSQNSSR--LSGNLISCGSRTSLKKWYLDCPSFISRSTILKTCFTNGDHEASLTPSTILPPFNKNKTDLSC---CLATEIFNPEMNPKQLKLRTGEFIDDMRYMSCDVWPLLDNVNENVSEGTFVCACACSDGAVRIYLFDGHGIEMISLLGDKKHCFQTVKWLHV--------SRDHIVMATSTDGHLSMWNLEKIFE 896
            S ++  P+T L+C  + LL G+   +L+Y+++   H  ++ +  N+     +H F  + P             V G K +R +KI         + + S       W+WD   LEG+  L +  HN+  ++D  +   L    C ++C L SA L      E+ + AG V NQ+L+W     + ++  V   +R  GH G+IFS+ +      + + S+DRS+RIW            + +   +GH+ARVW    + N  ++S GED  C+VW      IL+  +GH+G+ I ++     Q  + TGG D GIR W L            +  +   R         P  +K +T     RLL  T+ G L  +D  + K W  L ED  + +YC+L+       FG     N +G VK+  +  P   + + +F  GKV++L   L    +  LLA GP G +    I  +       +K    ++LP SKQRW T +     P   F    LVCGDRRGS+ LF                                    +   P+ +   +HGK GVTSV  HG +++TTGRDG + +  V   ++  V +QK C+G++W+ G+    D  +++ GF+   +  +W+    E L  + CGGG+RSW  S    DT+  +  AYLK   V +            + +EGLHG+E+ C K      LG  Y              SEG +   ++ T SEDTT+  +     T +   +     HI  V+ +       P      +  L+ +++S G R  +                   CF           S ++ P     + L+C    L++   +   + ++ + R  +   + RYMS  V  L     +    G  V A ACSDGAVR++L    G  ++ LL +  H  + V  +H          R  ++ + +TDG L+ W+L  + +
Sbjct:   14 SELILLPVTGLECVGDRLLAGEGPDVLVYSLDFGGHLRMIKRVQNLLGHYLIHGF-RVRPEPNGDLDLEAMVAVFGSKGLRVVKISWGQGHFWEL-WRSGLWNMSDWIWDARWLEGNIALALG-HNSVVLYDPVVGCILQEVPCTDRCTLSSACLIGDAWKELTIVAGAVSNQLLVWYPATALADNKPVAPDRRISGHVGIIFSMSYLESKGLLATASEDRSVRIWKVGDLRVPGGRVQNIGHCFGHSARVWQVKLLEN-YLISAGEDCVCLVWSHEG-EILQAFRGHQGRGIRAIAAHERQAWVITGGDDSGIRLWHLVGRGYRGLGVSALCFKSRSR---------PGTLKAVTLAGSWRLLAVTDTGALYLYD-VEVKCWEQLLEDKHFQSYCLLEAAPGPEGFGLCAMANGEGRVKVVPINTPTAAVDQTLF-PGKVHSLSWALRGYEELLLLASGPGGVVACLEISAAPSGKAIFVKERCRYLLPPSKQRWHTCSAFL--PPGDF----LVCGDRRGSVLLFPSRPGLLKDPGVGGKARAGAGAPVVGSGSSGGGNAFTGLGPVSTLPSLHGKQGVTSVTCHGGYVYTTGRDGAYYQLFVRDGQLQPVLRQKSCRGMNWLAGLRIVPDGSMVILGFHANEFV-VWNPRSHEKLHIVNCGGGHRSWAFS----DTEAAMAFAYLKDGDVMLYRALGGCTRPHVILREGLHGREITCVKRVGTITLGPEYGVPSFMQPDDLEPGSEGPDLTDIVITCSEDTTVCVLALPTTTGSAHALTAVCNHISSVRAVAVWGIGTPGGPQDPQPGLTAHVVSAGGRAEMH------------------CF-----------SIMVTPDPSTPSRLACHVMHLSSHRLDEYWDRQRNRHRMVKVDPETRYMSLAVCEL-----DQPGLGPLV-AAACSDGAVRLFLLQDSG-RILQLLAETFHHKRCVLKVHSFTHEAPNQRRRLLLCSAATDGSLAFWDLTTMLD 951
The following BLAST results are available for this feature:
BLAST of TCONS_00048381-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR68.343e-8326.67WD repeat-containing protein 6 OS=Homo sapiens GN=... [more]
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