TCONS_00048394-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00048394-protein
Unique Name	TCONS_00048394-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1040

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00048394-protein ID=TCONS_00048394-protein|Name=TCONS_00048394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1040bp
MKTVFWFITLTVGITQILIPQAYGVSQVPFPSYTVILPTTYSKDNAFLVL
EPIIYKLFKYDQSVINNLHEYNVTVSKVYTRRPGAGTPEGHGDTELLKCR
IVNGKPTSSIEGICLDGKTLKTTDDFNPPADQELTLQLDAKIKRDGIEKP
FQIFIEIKPECKAKKDMAIHIKTNCLPEKDKESRKKGRKMSRQIFSSGVE
YATEFEIDAKFHNQFIVLTTVKLLQGNLGTSNEVSLSIDAIGLDDKVINL
TTRLRVSRQDIYVKMDIFITVKAKAIAIFMEKQDGKAYSPVEIEYYGFED
FCKKDTACYQEFTLWETYLDRVNLDQCSDNNGVPDLAKLYGRCIEKSKVQ
TKASFRAFVSSMPSSQLKEGMGMTIECNTHGPIYVPHQIQIERVSKYEEI
EQISHTSTWLTGSAKFEDMTYYRCSIRSFYTQYDVQQTDWELVNLTNIHK
TKMTFRKATTFESALRNRESHEFGEMENLLKDNIKKMAEQTYPGNQNEFQ
VINFDKYSLSQLTVYGAYSMMVLSDVIRKQSYGDWLKNVQIMLEKQTVGE
KIKNVEIKAYGFCMEKTTAVDGMEGSDTYDWQAMSVTDPPQKQSCKRNVE
KNITAKCVVNEDGFYAEMKIDDSECVKEESDINLNELAQVNVTKDNVEKV
SSRLRNLTRSSDSFTTQDVESGVTSLENIVSYVASSGKVADDFFQSVDDV
LAVQSKTMMKSQTSNATSQRLMNVINKAGGDIAQDPPKTVTKQNYALGGM
KISKTSNKDLVAKASSGSSLHLIMGSDAESGMKSDSSIIVPSEITRAIGE
ASAEEMNFVAVVYRNNVIFQTDSKDQIMSRNILSAQIRGKSVQNTSQPIK
MMFKKSTKNHGGKIDQYKCVFWNVSRQGWSTRGLNSFYHKANDMYECHSN
HLTNFALLFNAGDVSESDSEILSAITYVGLGLNMAGAVLTLLTYIIFPIL
REHVPPKILMNLCAALIMLSIIFLVGAERDNKTKISCEIASFLLQYTILA
VFCWSAIEGFHSVRGLVFPMKTDIRGFITKAXLLEDWCSR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030789	XLOC_030789	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00048394	TCONS_00048394	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000203	GPS
IPR000832	GPCR_2_secretin-like
IPR017981	GPCR_2-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0004888	transmembrane signaling receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007166	cell surface receptor signaling pathway

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0004888	transmembrane signaling receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000203	GPS motif	SMART	SM00303	GPS_3	coord: 865..914 e-value: 0.001 score: 28.4
IPR000203	GPS motif	PFAM	PF01825	GPS	coord: 868..908 e-value: 9.8E-10 score: 38.9
IPR000203	GPS motif	PROSITE	PS50221	GPS	coord: 866..914 score: 11.135
IPR000832	GPCR, family 2, secretin-like	PFAM	PF00002	7tm_2	coord: 921..1022 e-value: 1.3E-14 score: 54.0
None	No IPR available	GENE3D	1.20.1070.10		coord: 908..1033 e-value: 3.5E-10 score: 38.8
IPR017981	GPCR, family 2-like	PROSITE	PS50261	G_PROTEIN_RECEP_F2_4	coord: 922..1040 score: 13.104

Blast

[Close]

BLAST of TCONS_00048394-protein vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.003e-25
Identity = 116/481 (24.12%), Postives = 219/481 (45.53%), Query Frame = 0

Query:  578 TYDWQAMSVTDPPQKQSCKRNVEKNITAKCVVNED---GFYAEMKIDDSECVKEESDINLNELAQVNVTKDNVEKVSSRLRNLTRSSDSFTTQDVESGVTSLENIVSYVASSGKVADDFFQSVDDVLAVQSKTMMKSQTSNATSQRLMNVINKAG------GDIAQ----DPPKTVTKQNYALGGMKISKTSNKDLVAKASSGSSLHLIMGSDAESGMKSDSSIIVPSEITRAIGEASAEEMNFVAVVYRNNVIFQTDSKDQIMSRNILSAQIRGKS-VQNTSQPIKMMFKK--STKNHGGKIDQYKCVFWNVSRQ----GWSTRGLNSFYHKANDMYE-CHSNHLTNFALL--FNAGDVSESDSEILSAITYVGLGLNMAGAVLTLLTYIIFPILREHVPPKILMNLCAALIMLSIIFLVGAERDNKTKIS-CEIASFLLQYTILAVFCWSAIEGFHSVRGLVFPMKTDIRGFITKAXLL 1034
            TY W   + T+  Q + C +N + N T  C ++ +     + + K    + ++E  D  + +LA + ++ +N E V+  + NL   S +   ++ +  V+ + +I      S  +     Q ++ VL  Q+ +   +   +  S  ++ +I + G      G IA          V + ++   GM  S  S ++       G+   + +G+    G+ +  SI +P  +T  I  ++ + + F    +    +F+T +  + ++  ++SA I     +QN + P+ +  +     +N+G    Q  C FW+        GW++ G      + N  Y  C  +HLT+F +L   +   V   + +IL+ ITY G G++     + ++TYI F  LR+  P KIL+NLC AL+ML+++FL+ +   +  K+  C  A+  L Y +L  F W  +E  H    LV      I  +I K  L+
Sbjct: 2398 TYKWLLTNPTETAQTR-CIKNEDGNATRFCSISINTGKSQWEKPKFKQCKLLQELPD-KIVDLANITISDENAEDVAEHILNLINESPALGKEETKIIVSKISDISQCDEISMNLTHVMLQIINVVLEKQNNS---ASDLHEISNEILRIIERTGHKMEFSGQIANLTVAGLALAVLRGDHTFDGMAFSIHSYEE-------GTDPEIFLGNVPVGGILA--SIYLPKSLTERIPLSNLQTILFN--FFGQTSLFKTKNVTKALTTYVVSASISDDMFIQNLADPVVITLQHIGGNQNYG----QVHCAFWDFENNNGLGGWNSSGCK--VKETNVNYTICQCDHLTHFGVLMDLSRSTVDSVNEQILALITYTGCGISSIFLGVAVVTYIAFHKLRKDYPAKILINLCTALLMLNLVFLINSWLSSFQKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVFNIYIPNYILKFCLV 2856

The following BLAST results are available for this feature:

BLAST of TCONS_00048394-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00048394-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGRG4	3.003e-25	24.12	Adhesion G-protein coupled receptor G4 OS=Homo sap...	[more]

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TCONS_00048394-protein (polypeptide) - C. hemisphaerica