TCONS_00048416-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048416-protein
Unique NameTCONS_00048416-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length111

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048416-protein ID=TCONS_00048416-protein|Name=TCONS_00048416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MRYVAAYLLAVLGGNETPSANDLKKILESSGVGFDAENADNVVSKLAGKT
IAELIEEGSKKMASMPAGGAAPAAGGAGGAAAGGEAEAEKKEEKKEESEE
SDDDMGFGLFD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030798XLOC_030798Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048416TCONS_00048416Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 81..101
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 18..110
e-value: 5.8E-24
score: 84.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..111
NoneNo IPR availableCDDcd05833Ribosomal_P2coord: 1..111
e-value: 1.68147E-29
score: 102.727
IPR027534Ribosomal protein L12 familyHAMAPMF_01478Ribosomal_L12_archcoord: 2..111
score: 16.709

Blast
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BLAST of TCONS_00048416-protein vs. Swiss-Prot (Human)
Match: RLA2 (60S acidic ribosomal protein P2 OS=Homo sapiens GN=RPLP2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.456e-19
Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = 0 
Query:    1 MRYVAAYLLAVLGGNETPSANDLKKILESSGVGFDAENADNVVSKLAGKTIAELIEEGSKKMASMP 66
            MRYVA+YLLA LGGN +PSA D+KKIL+S G+  D +  + V+S+L GK I ++I +G  K+AS+P
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVP 66
The following BLAST results are available for this feature:
BLAST of TCONS_00048416-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RLA28.456e-1954.5560S acidic ribosomal protein P2 OS=Homo sapiens GN... [more]
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