TCONS_00048454-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048454-protein
Unique NameTCONS_00048454-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length185

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048454-protein ID=TCONS_00048454-protein|Name=TCONS_00048454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MNMSLLPAVRSLVRVPLLTRTFQNGFKSIQASSIHHCARKGLSTSLTSTV
VKSGLLSKVHQPALASSLTVQAKRFLPTLNQVRRHNPRTKRKRSKPIIPA
SRRILLGPQRKGVCVKNVVRTPRKPNSAQRKCAVLRLNDGRLITAYIPGE
KANLQEHGVVLFRGGRVQDCPGLKYKIIRGVYDMN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030808XLOC_030808Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048454TCONS_00048454Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006032Ribosomal_S12/S23
IPR005679Ribosomal_S12_bac
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0015935small ribosomal subunit
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 157..174
score: 64.35
coord: 174..185
score: 34.23
coord: 138..157
score: 56.88
coord: 122..137
score: 67.27
coord: 107..122
score: 45.49
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 107..179
e-value: 2.1E-23
score: 82.0
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 123..130
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 77..184
e-value: 6.1E-36
score: 121.0
IPR005679Ribosomal protein S12, bacterial-typeCDDcd03368Ribosomal_S12coord: 78..183
e-value: 3.87322E-43
score: 140.732
NoneNo IPR availableGENE3D2.40.50.140coord: 73..185
e-value: 3.2E-37
score: 126.7
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 88..184

Blast
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BLAST of TCONS_00048454-protein vs. Swiss-Prot (Human)
Match: RT12 (28S ribosomal protein S12, mitochondrial OS=Homo sapiens GN=MRPS12 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.958e-25
Identity = 60/143 (41.96%), Postives = 74/143 (51.75%), Query Frame = 0 
Query:   41 GLSTSLTSTVVKSGLLSKVHQPALASSLTVQAKRFLPTLNQVRRHNPRTKRKRSKPIIPASRRILLGPQRKGVCVKNVVRTPRKPNSAQRKCAVLRLNDGRLITAYIPGEKANLQEHGVVLFRGGRVQDCPGLKYKIIRGVYD 183
            GL+TSLT              PAL   L       + TLNQ+ R  P  +  R   + P   R    PQ KGV +    R P+KPNSA RKC  +RL+ GR    +IPGE   LQEH +VL  GGR QD PG+K  ++RG YD
Sbjct:    9 GLNTSLTCG------------PALVPRLWATCS--MATLNQMHRLGPPKRPPRK--LGPTEGR----PQLKGVVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYD 131
The following BLAST results are available for this feature:
BLAST of TCONS_00048454-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT127.958e-2541.9628S ribosomal protein S12, mitochondrial OS=Homo s... [more]
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