TCONS_00048504-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048504-protein
Unique NameTCONS_00048504-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048504-protein ID=TCONS_00048504-protein|Name=TCONS_00048504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=575bp
MEFEVKNDLSRVANILGNLEDSTGLASSHLKNQSDDDSGWDTDLECEDET
TSDAFDVVQVNKEKYVKACKECGVVPASYFLRNMTNVRLNMSHHGLGHKG
AKAIAIGLMTNTHLTALDLSDNCLGSEGVSCICEMMIENCFISELDLSEN
NIGYEGVKHICALLMQSDSLKRLALRKNSLETKSAVILSNTLKSHTGLRF
IDLSNNNFGEEAGLHFAPVISTNEYLEEINLSWNHLRQKGAFAIAKSLKE
NYTLKKLDLSWNGFGDDGIYVLSDSLIQNNSLQQLNLSSNRITHIGAGHL
QKALKENEGLQVFKLGHNPLQHGVTFLIQGIKTNLNSTLVEFDLTDVQVN
DEFITILNQLKTERTELQVYHGGLGGAPQKAAERPKPMRVLRDYIKNNQM
RVFDLFKSLDKDKSMSISVPEFVAGLKETGVPLRIDELLTLVKSLDLDGD
GEIDYREMVIGQQEMQKEEREEIIRDKADRKRKKTLAQGLKPSTPSTGVR
IRKSSPNPRFSPLRSPAHSRPTSPVSPRVMSPVLQRRRSRTFTPGYDDTP
KDQKSNELLIPPSTTPGRKSPAQEI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030850XLOC_030850Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048504TCONS_00048504Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR001611Leu-rich_rpt
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 437..465
e-value: 5.1
score: 12.0
coord: 401..429
e-value: 0.095
score: 21.8
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 401..459
e-value: 2.4E-8
score: 34.2
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 433..468
score: 9.743
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 397..432
score: 11.529
IPR002048EF-hand domainCDDcd00051EFhcoord: 401..459
e-value: 1.11361E-10
score: 56.7873
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 195..222
e-value: 2.0
score: 15.1
coord: 139..166
e-value: 0.002
score: 27.4
coord: 167..194
e-value: 2.0
score: 15.0
coord: 223..250
e-value: 0.63
score: 18.6
coord: 251..278
e-value: 0.0022
score: 27.2
coord: 279..306
e-value: 0.0095
score: 25.1
coord: 111..138
e-value: 0.043
score: 23.0
NoneNo IPR availableGENE3D1.10.238.10coord: 449..487
e-value: 0.0041
score: 16.4
NoneNo IPR availableGENE3D3.40.50.10480coord: 77..173
e-value: 4.4E-20
score: 71.4
NoneNo IPR availableGENE3D1.10.238.10coord: 355..416
e-value: 0.014
score: 14.8
NoneNo IPR availableGENE3D1.10.238.10coord: 417..448
e-value: 1.0E-9
score: 37.8
NoneNo IPR availableGENE3D3.40.50.2000coord: 174..239
e-value: 1.6E-17
score: 63.4
coord: 240..354
e-value: 5.2E-25
score: 87.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 464..575
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 78..361
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 139..161
e-value: 4.7E-4
score: 19.9
coord: 278..297
e-value: 0.19
score: 11.8
coord: 251..272
e-value: 4.4E-5
score: 23.1
coord: 110..133
e-value: 2.8E-7
score: 30.0
coord: 223..245
e-value: 0.033
score: 14.1
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 113..133
score: 5.794
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 225..246
score: 4.909
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 253..273
score: 5.117
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 281..302
score: 8.012
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 197..218
score: 6.072
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 446..458
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 392..465

Blast
[Close]
BLAST of TCONS_00048504-protein vs. Swiss-Prot (Human)
Match: LR74A (Leucine-rich repeat-containing protein 74A OS=Homo sapiens GN=LRRC74A PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.146e-78
Identity = 152/411 (36.98%), Postives = 238/411 (57.91%), Query Frame = 0 
Query:   41 DTDLECEDETTSDAFDVVQVNKEKYVKACKECGVVPASYFLRNMTNVRLNMSHHGLGHKGAKAIAIGLMTNTHLTALDLSDNCLGSEGVSCICEMMIENCFISELDLSENNIGYEGVKHICALLMQ-SDSLKRLALRKNSLETKSAVILSNTLKSHTGLRFIDLSNNNFGEEAGLHFAPVISTNEYLEEINLSWNHLRQKGAFAIAKSLKENYTLKKLDLSWNGFGDDGIYVLSDSLIQNNSLQQLNLSSNRITHIGAGHLQKALKENEGLQVFKLGHNPL-QHGVTFLIQGIKTNLNSTLVEFDLTDVQVNDEFITILNQLKTERTELQVYHGGLGG-APQKAAE-RPKPMRVLRDYIKNNQMRVFDLFKSLDKDKSMSISVPEFV-AGLKETGVPLRIDELLTLVKSLD 446
            +TDLE ED+     F   Q  KE Y++ACK  GVVP SYF+RNM    +N++HHGLG +G KAIAI L++N  +T L+L DNC+  EGV  + EM+ EN ++ E+++S N++G EG + I     + S S+  L L  N  +  SA +L   L ++  ++ +DLS+N F +  G H   +++ N  L  ++LSWN+   +GA A+   L+ N TL KLDLS NGFG++    L + L  N  L  L++  N I + GA  + K L+ NE L+V KL  NP+   G   LI  IK N  S + E D+++V V+++F+  L+ +     +L V    + G +P+K       PM++++ Y   +++ + D FKSL+   +M +SV EF    +++  VPL   ++  ++K LD
Sbjct:   66 ETDLEIEDD--EKFFTTGQ--KELYLEACKLMGVVPVSYFIRNMEESYVNLNHHGLGPRGTKAIAIALVSNMAVTKLELEDNCIMEEGVLSLVEMLQENYYLQEMNISNNHLGLEGARIISDFFERNSSSIWSLELSGNDFKEDSAALLCQALSTNYQIKKLDLSHNQFSDVGGEHLGQMLAINVGLTSLDLSWNNFHTRGAVALCNGLRGNVTLTKLDLSMNGFGNEVALALGEVLRLNRCLVYLDIGGNDIGNEGASKISKGLESNESLRVLKLFLNPINMDGAILLILAIKRNPKSRMEELDISNVLVSEQFMKTLDGVYAVHPQLDVVFKAVQGLSPKKTIFLLTNPMKLIQSYADQHKITIVDFFKSLNPTGTMKMSVDEFQKVMIEQNKVPLNQYQVREVIKKLD 472
The following BLAST results are available for this feature:
BLAST of TCONS_00048504-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LR74A1.146e-7836.98Leucine-rich repeat-containing protein 74A OS=Homo... [more]
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