TCONS_00048518-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048518-protein
Unique NameTCONS_00048518-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048518-protein ID=TCONS_00048518-protein|Name=TCONS_00048518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=662bp
LDKLVKMSRLIVKNLPEKIKEEKFREIFSSAGQITDLKLCFTRKGIFRKF
GFVGYQNETDAKNALNQLDKTFINTNKISIEICKDLGDDTAPRAWSKYSK
DSSAHSRKTKEIQERKDRIKKLQESEEKPKLDEKKKKGKNKKVLKQLEDV
EEDEGFQEFLEVHGGSKNKTWTDQTVAPNSAKEVELQTTGEPTQQKANEI
EMEGDDDSDVDTMNADSANLEEPAEVEQIKTEVATKEVDTALSSKKTSDL
DWLKSKVTKTEGESTASTETTTESRESQPMEENENESPQKSKKKKKKKSS
QETNDPPVSLDTCTTVKSATLKLRGVPFKCTEADVIQFFKPLNILDIRFP
KDKKDRPSGYAFVDFADRQAAQDAMKKNGKKMKGRYIELFTEVNDKPSDG
NKKYNKSGEWLNKSDEPVDDISESGRLFIRNLPYTCTEEDIQTLFEKYGT
LSEINLPIDKNNNKATGFAFVTFMMPEHAVKALSALDGKIFQGRLLHLLP
GRAQKSKVNKDGESGEMTSSYKKKKEVDQKSLSGSSHNWNALFLGANAVA
DVMADRLNTTKKNILDSEGSGSVAVRMALGETELVTETRQFLESHGVKLD
VFGQATTARSKNILLVKNLPPGTTTKELLDLFSQHGDLGRLLMPPFGITA
IVXRNTVTWGVF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030856XLOC_030856Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048518TCONS_00048518Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003954RRM_dom_euk
IPR000504RRM_dom
IPR034418RMB19_RRM1
IPR034419RBM19_RRM3
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 133..153
NoneNo IPR availableCOILSCoilCoilcoord: 105..125
NoneNo IPR availableGENE3D3.30.70.330coord: 3..151
e-value: 7.4E-18
score: 64.3
NoneNo IPR availableGENE3D3.30.70.330coord: 513..647
e-value: 2.1E-5
score: 23.8
NoneNo IPR availableGENE3D3.30.70.330coord: 265..403
e-value: 4.7E-20
score: 71.4
coord: 404..512
e-value: 3.0E-25
score: 88.2
NoneNo IPR availableCDDcd12254RRM_hnRNPH_ESRPs_RBM12_likecoord: 320..390
e-value: 2.09359E-17
score: 76.8271
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 426..499
e-value: 1.5E-4
score: 31.1
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 426..499
e-value: 1.3E-23
score: 94.4
coord: 9..81
e-value: 3.6E-17
score: 73.1
coord: 320..390
e-value: 3.3E-17
score: 73.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 323..387
e-value: 1.6E-12
score: 46.9
coord: 10..78
e-value: 1.1E-14
score: 53.9
coord: 427..497
e-value: 2.1E-21
score: 75.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 8..85
score: 15.067
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 425..503
score: 17.95
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 319..389
score: 12.526
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 316..396
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 424..513
coord: 609..644
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 7..87
IPR034418Probable RNA-binding protein 19, RNA recognition motif 1CDDcd12564RRM1_RBM19coord: 8..83
e-value: 1.9084E-35
score: 127.81
IPR034419Probable RNA-binding protein 19, RNA recognition motif 3CDDcd12567RRM3_RBM19coord: 423..501
e-value: 3.02538E-47
score: 160.263

Blast
[Close]
BLAST of TCONS_00048518-protein vs. Swiss-Prot (Human)
Match: RBM19 (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3)

HSP 1 Score: 463.381 bits (1191), Expect = 1.090e-151
Identity = 281/669 (42.00%), Postives = 386/669 (57.70%), Query Frame = 0 
Query:    7 MSRLIVKNLPEKIKEEKFREIFSSAGQITDLKLCFTRKGIFRKFGFVGYQNETDAKNALNQLDKTFINTNKISIEICKDLGDDTAPRAWSKYSKDSSAHSRKTKEIQERKDRIKKLQESEEKPKLDEKKKKGKNKKVLKQLEDVEEDEGFQEFLEVHGG-SKNKTWTDQTVAPNSAKEVELQTTGEPTQQKANEIEMEGDDDSDVDTMNADSANLEEPAEVEQIKTEVATKEVDTALSSKKTSDLDWLKSKVTKT----EGESTASTETTTESRESQPMEENENESPQKSKKKKKKKSSQETNDP---------------PVSLDTCTTVKSATLKLRGVPFKCTEADVIQFFKPLNILDIRFPKDKKDRPSGYAFVDFADRQAAQDAMKKNGKKMKGRYIELFTEVNDKPSDGNKKYNKSGEWLNK---SDEPVDDISESGRLFIRNLPYTCTEEDIQTLFEKYGTLSEINLPIDKNNNKATGFAFVTFMMPEHAVKALSALDGKIFQGRLLHLLPGRAQKSKVNKDGESGEMTSSYKKKKEVDQKSLSGSSHNWNALFLGANAVADVMADRLNTTKKNILDSEGSGSVAVRMALGETELVTETRQFLESHGVKLDVFGQATTARSKNILLVKNLPPGTTTKELLDLFSQHGDLGRLLMPPFGITAIV 652
            MSRLIVKNLP  +KEE+FR++F++ G +TD  L FT+ G FRKFGF+G+++E +A+ A    +K+FI+T++I++E CK  GD   PRAWSK+++  S      +  Q  KD               E KK  K KKV  QLE ++ED  FQEFL VH   ++  TW +  +              EP++ K+          SD    ++DS    E     +   E A+ E   A+  K+ SD+D+LKSK+ K       E   S +      E    EE ++ +    +++  K + QE   P               P +    TT    T+KLRG PF  TE +V++F  PL  + IR  ++     +GY FVDF++ +  + A+K N + M GRYIE+F E N   + G  K N +  W  +    +E  +D++ESGRLF+RNLPYT TEED++ LF KYG LSE++ PID    K  GFAF+TFM PEHAVKA S +DG++FQGR+LH+LP   +K + ++D  S   +SSYKKKKE   K+ S SSHNWN LF+G NAVAD +A + N TK  + D E  GSVAVR+ALGET+LV E R+FL  +GV LD F QA   RSK ++LVKNLP GT   +L + F   G LGR+L+P  GITAIV
Sbjct:    1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPS------QPKQPPKDST-----------TPEIKKDEKKKKVAGQLEKLKEDTEFQEFLSVHQRRAQAATWANDGL------------DAEPSKGKSKPA-------SDYLNFDSDSGQESEEEGAGEDLEEEASLEPKAAVQ-KELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCH--TVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPK-NTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKK-EASEDA-SALGSSSYKKKKEAQDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITAIV 627
The following BLAST results are available for this feature:
BLAST of TCONS_00048518-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM191.090e-15142.00Probable RNA-binding protein 19 OS=Homo sapiens GN... [more]
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