TCONS_00048526-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048526-protein
Unique NameTCONS_00048526-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048526-protein ID=TCONS_00048526-protein|Name=TCONS_00048526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
EFLPDFPDKFNVPRSFRAGKKIIWSIFVKAARFGFCIKMSAMEVDEAPKK
KIYELPWVEKYRPTKLNEVTGNEETIKRLQVFAEQGNLPNIIIAGSPGIG
KTTSILCLARQLLGQSYKDAVLELNASNDRGIDVVRNKIKMFAQKKVTLP
KGRHKIIILDEADSMTSGAQQALRRTMELFSKTTRFALACNQSDKIIEAI
QSRCAVLRYTKLTDAQILERLLDICDKEKVPKTDDGLEAIVFTAQGDMRQ
GINNLQSTCAGFGFVNSDNVFKVCDEPHPLLIKNMLTLCVESNFEEAYKI
MSHLWKMGYSAVDIISNIFRVCKNLDMAEYLKLEFIKEIGYTHMRIAEGV
QSLLQMSGLLAKLCQKSLPNT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030859XLOC_030859Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048526TCONS_00048526Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003959ATPase_AAA_core
IPR013748Rep_factorC_C
IPR027417P-loop_NTPase
IPR008921DNA_pol3_clamp-load_cplx_C
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 87..213
e-value: 6.3E-11
score: 52.3
NoneNo IPR availableGENE3D1.10.8.60coord: 213..279
e-value: 2.4E-22
score: 78.1
NoneNo IPR availableGENE3D3.40.50.300coord: 45..211
e-value: 1.8E-38
score: 131.4
NoneNo IPR availableGENE3D1.20.272.10coord: 280..368
e-value: 1.2E-34
score: 117.9
NoneNo IPR availableCDDcd00009AAAcoord: 71..204
e-value: 7.40445E-23
score: 91.8239
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 91..208
e-value: 5.3E-13
score: 49.4
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 277..362
e-value: 1.4E-27
score: 95.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 53..275
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 277..365

Blast
[Close]
BLAST of TCONS_00048526-protein vs. Swiss-Prot (Human)
Match: RFC2 (Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3)

HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 253/316 (80.06%), Postives = 286/316 (90.51%), Query Frame = 0 
Query:   53 YELPWVEKYRPTKLNEVTGNEETIKRLQVFAEQGNLPNIIIAGSPGIGKTTSILCLARQLLGQSYKDAVLELNASNDRGIDVVRNKIKMFAQKKVTLPKGRHKIIILDEADSMTSGAQQALRRTMELFSKTTRFALACNQSDKIIEAIQSRCAVLRYTKLTDAQILERLLDICDKEKVPKTDDGLEAIVFTAQGDMRQGINNLQSTCAGFGFVNSDNVFKVCDEPHPLLIKNMLTLCVESNFEEAYKIMSHLWKMGYSAVDIISNIFRVCKNLDMAEYLKLEFIKEIGYTHMRIAEGVQSLLQMSGLLAKLCQKSL 368
            YELPWVEKYRP KLNE+ GNE+T+ RL+VFA +GN+PNIIIAG PG GKTTSILCLAR LLG + KDA+LELNASNDRGIDVVRNKIKMFAQ+KVTLPKGRHKIIILDEADSMT GAQQALRRTME++SKTTRFALACN SDKIIE IQSRCAVLRYTKLTDAQIL RL+++ +KE+VP TDDGLEAI+FTAQGDMRQ +NNLQST +GFGF+NS+NVFKVCDEPHPLL+K M+  CV +N +EAYKI++HLW +GYS  DII NIFRVCK   MAEYLKLEFIKEIGYTHM+IAEGV SLLQM+GLLA+LCQK++
Sbjct:   34 YELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTM 349
The following BLAST results are available for this feature:
BLAST of TCONS_00048526-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFC20.000e+080.06Replication factor C subunit 2 OS=Homo sapiens GN=... [more]
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