TCONS_00048539-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048539-protein
Unique NameTCONS_00048539-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length204

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048539-protein ID=TCONS_00048539-protein|Name=TCONS_00048539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MSSLSRTTNSDSRIYVGNLPQFVRQRDLEDHFDRYGKVRGIDIHSRFDPA
FAFIEFEDSRDADDAVYGEDGKRFDGNRIKVQFPRGTPRDSSGRGRGSSR
GGRGPPGGSRGGRGGRGPPSRTDHRIIVSGLPKSGSWQDLKDHMREAGEV
VYADVYKDGTAVCEFKSSSDMKWALKNLDDTKFKSHELGTSLSYTTTSIS
LMLG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030861XLOC_030861Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048539TCONS_00048539Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 125..191
e-value: 5.7E-8
score: 42.5
coord: 13..82
e-value: 3.8E-17
score: 72.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 126..188
e-value: 1.4E-12
score: 47.1
coord: 14..80
e-value: 7.4E-17
score: 60.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 12..86
score: 16.739
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 124..195
score: 10.855
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 11..190
NoneNo IPR availableGENE3D3.30.70.330coord: 119..197
e-value: 1.1E-13
score: 50.7
NoneNo IPR availableGENE3D3.30.70.330coord: 2..104
e-value: 3.6E-22
score: 78.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..124
NoneNo IPR availableCDDcd12338RRM1_SRSF1_likecoord: 13..83
e-value: 3.15477E-32
score: 112.1

Blast
[Close]
BLAST of TCONS_00048539-protein vs. Swiss-Prot (Human)
Match: SRSF1 (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.070e-56
Identity = 101/185 (54.59%), Postives = 128/185 (69.19%), Query Frame = 0 
Query:    9 NSDSRIYVGNLPQFVRQRDLEDHFDRYGKVRGIDIHSRFD-PAFAFIEFEDSRDADDAVYGEDGKRFDGNRIKVQFPRGTPRDSSGRGRGSSRGGRGPPGGSRGGRGGRGPPSR-TDHRIIVSGLPKSGSWQDLKDHMREAGEVVYADVYKDGTAVCEFKSSSDMKWALKNLDDTKFKSHELGTS 191
            N+D RIYVGNLP  +R +D+ED F +YG +R ID+ +R   P FAF+EFED RDA+DAVYG DG  +DG R++V+FPR       G G G               RG  GPPSR +++R++VSGLP SGSWQDLKDHMREAG+V YADVY+DGT V EF    DM +A++ LD+TKF+SHE  T+
Sbjct:   13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGG---------GGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 188
The following BLAST results are available for this feature:
BLAST of TCONS_00048539-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF12.070e-5654.59Serine/arginine-rich splicing factor 1 OS=Homo sap... [more]
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