TCONS_00048547-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048547-protein
Unique NameTCONS_00048547-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048547-protein ID=TCONS_00048547-protein|Name=TCONS_00048547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=733bp
MLKIIIKALIALSVVEAVICQSTTLSHDFVIWWSYARFPITGFVFGTIIL
TWVWIYLNRDRFVEKKNESKNDQKLIDEYEQQRNQPTLKIFYGTQTGTSE
KFAGDLMKAAAEQGLSATVIDIKEKDPEQLLTNQTDGKSICVFIVSTFVD
GTPPESCNNFWTFISDSVNDFRVSKLMLKGMKYTVFGLGNSLYKDSQDVD
NYNVFGMNLDENLERLSATRYCKLGLGDDNIQRKDLGNISEDFKEWYGQL
LKQIAKDSVTKEEKINGVTPHEDSNGSVKKVSDEKPATNGDVNYESESDS
ENTTSGGGGCKSGAGDDGGLVDVEDIGVVMGKVKQTESEFDEGFVGEKSA
PNNREMITPMLKKSLEKQGYKLIGSHSGVKICRWTKSMMRGRGGCYKHTF
YGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWKWKMDEPKKIVDGA
LENHYKMVKQFRGVPGVKAERYTEAMNVQHCALSLVGEPIMYPEINELIN
LLHSKMISTFLVTNAQFPDAIRNLKPVTQLYVSVDASTKESLKKIDRPLF
RDFWQRFLESLTSLSDKGQRTVYRLTLVKAFNTEEIEGYAKLVSLGKPGF
IEVKGVTYCGDSKASSLTMENVPWHQEVVGFVQQLAESLPDYEIASEHEH
SNCVLLAHKRFKINNKWHTWIDYPKYHQLMKDYEESNGTKTFKDIDYMEI
TPEWAVFGNPHRGFDPDETRWHRKKKADVTGGC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030865XLOC_030865Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048547TCONS_00048547Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001094Flavdoxin-like
IPR029039Flavoprotein-like_dom
IPR007197rSAM
IPR013917tRNA_wybutosine-synth
IPR013785Aldolase_TIM
IPR008254Flavodoxin/NO_synth
IPR034556tRNA_wybutosine-synthase
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0010181FMN binding
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:00515394 iron, 4 sulfur cluster binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008033 tRNA processing
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0010181 FMN binding
molecular_function GO:0051536 iron-sulfur cluster binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 62..82
NoneNo IPR availableSFLDSFLDF00284tRNA_wybutosine-synthesizingcoord: 348..585
e-value: 0.0
score: 432.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 261..317
NoneNo IPR availableCDDcd01335Radical_SAMcoord: 413..606
e-value: 2.10394E-6
score: 46.5578
NoneNo IPR availableSUPERFAMILY102114Radical SAM enzymescoord: 414..593
IPR001094Flavodoxin-likePRINTSPR00369FLAVODOXINcoord: 180..190
score: 53.84
coord: 210..229
score: 40.39
coord: 142..153
score: 38.41
coord: 89..102
score: 48.21
IPR029039Flavoprotein-like domainGENE3D3.40.50.360coord: 57..267
e-value: 7.7E-35
score: 119.5
IPR029039Flavoprotein-like domainSUPERFAMILY52218Flavoproteinscoord: 88..255
IPR007197Radical SAMPFAMPF04055Radical_SAMcoord: 412..593
e-value: 5.6E-25
score: 88.5
IPR007197Radical SAMSFLDSFLDS00029Radical_SAMcoord: 412..593
e-value: 5.899E-42
score: 139.8
IPR013917tRNA wybutosine-synthesisPFAMPF08608Wyosine_formcoord: 596..658
e-value: 2.3E-27
score: 95.0
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 401..713
e-value: 4.2E-32
score: 111.2
IPR008254Flavodoxin/nitric oxide synthasePFAMPF00258Flavodoxin_1coord: 90..234
e-value: 1.1E-22
score: 80.7
IPR008254Flavodoxin/nitric oxide synthasePROSITEPS50902FLAVODOXIN_LIKEcoord: 88..251
score: 27.653
IPR034556S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthaseSFLDSFLDG01071tRNA_wybutosine-synthesizingcoord: 348..638
e-value: 0.0
score: 490.3

Blast
[Close]
BLAST of TCONS_00048547-protein vs. Swiss-Prot (Human)
Match: TYW1 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Homo sapiens GN=TYW1 PE=2 SV=2)

HSP 1 Score: 724.931 bits (1870), Expect = 0.000e+0
Identity = 360/659 (54.63%), Postives = 462/659 (70.11%), Query Frame = 0 
Query:   88 LKIFYGTQTGTSEKFAGDLMKAAAEQGLSATVIDIKEKDPEQLLTNQTDGKSICVFIVSTFVDGTPPESCNNFWTFISDSVNDFRVSKLMLKGMKYTVFGLGNSLYKDSQDVDNYNVFGMNLDENLERLSATRYCKLGLGDDNIQRKDLGNISEDFKEWYGQLLKQIAKDSVTKEEKINGVTPHEDSNGSVKKVSDEKP--ATNGDVNYESESDSENTTSGGGGCKSGAGDDGGL---VDVEDIGVVMGKVKQTESEFDEGF--------VGEKSAPNNREMITPMLKKSLEKQGYKLIGSHSGVKICRWTKSMMRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWKWKMDEPKKIVDGALENHYKMVKQFRGVPGVKAERYTEAMNVQHCALSLVGEPIMYPEINELINLLHSKMISTFLVTNAQFPDAIRNLKPVTQLYVSVDASTKESLKKIDRPLFRDFWQRFLESLTSLSDKGQRTVYRLTLVKAFNTEEIEGYAKLVSLGKPGFIEVKGVTYCGDSKASSLTMENVPWHQEVVGFVQQLAESLPDYEIASEHEHSNCVLLAHKRFKINNKWHTWIDYPKYHQLMKDYEESNGTKTFKDIDYMEITPEWAVFGNPHRGFDPDETRWHRKKKADVTGGC 733
            +KIFYG+QTGT++ FA  L +A     L   +I++KE DP+  L  +   K++CVF+V+T+ DG P ES   F  ++ ++  DFR  K  LKGM+Y VFGLGNS Y       ++N  G N+D+ L  L A R    G GD ++ +   G+I  DF+ W  + + Q+      + +K  G    +    S +  S+E+   +   D  +  +++ E         + G  D   L   VDVED+G +M  VK+ + E ++          +G       R MITP L+++L KQGY+LIGSHSGVK+CRWTKSM+RGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEW+WKMD+P+ I+  A+ENH  M+KQF+GVPGVKAER+ E M V+HCALSLVGEPIMYPEIN  + LLH   IS+FLVTNAQFP  IRNL+PVTQLYVSVDASTK+SLKKIDRPLF+DFWQRFL+SL +L+ K QRTVYRLTLVKA+N +E++ YA+LVSLG P FIEVKGVTYCG+S ASSLTM +VPWH+EVV FV +L + +P+YEIA EHEHSNC+L+AH++FKI  +W TWIDY ++ +L+++YE+S G+KTF   DYM  TP WA+FG   RGFDP +TR  RK K+    GC
Sbjct:   79 VKIFYGSQTGTAKGFATVLAEAVTSLDLPVAIINLKEYDPDDHLIEEVTSKNVCVFLVATYTDGLPTESAEWFCKWLEEASIDFRFGKTYLKGMRYAVFGLGNSAY-----ASHFNKVGKNVDKWLWMLGAHRVMSRGEGDCDVVKSKHGSIEADFRAWKTKFISQLQALQKGERKKSCGGHCKKGKCESHQHGSEEREEGSHEQDELHHRDTEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDQPEMILKEAIENHQNMIKQFKGVPGVKAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQFPAEIRNLEPVTQLYVSVDASTKDSLKKIDRPLFKDFWQRFLDSLKALAVKQQRTVYRLTLVKAWNVDELQAYAQLVSLGNPDFIEVKGVTYCGESSASSLTMAHVPWHEEVVQFVHELVDLIPEYEIACEHEHSNCLLIAHRKFKIGGEWWTWIDYNRFQELIQEYEDSGGSKTFSAKDYMARTPHWALFGASERGFDPKDTRHQRKNKSKAISGC 732
The following BLAST results are available for this feature:
BLAST of TCONS_00048547-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYW10.000e+054.63S-adenosyl-L-methionine-dependent tRNA 4-demethylw... [more]
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