TCONS_00048555-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048555-protein
Unique NameTCONS_00048555-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1554

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048555-protein ID=TCONS_00048555-protein|Name=TCONS_00048555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1554bp
MYSFDEDPPALPPRQTTLQTDDGGDPFSTTYVIPTDGSSETDRQITELAR
VRHSTPQATQGARVTFADETDDHASSSPRNGSSRMPSGVNTWETTLSESI
AKISRPQVHYQDLPVFDGSGSKSYKTFIREFEEMARLGFWTEEEKLAAFP
ARLDKRPKLYYHRLTKELKKTYNAAKEAVKEMFGNAEDESLLRRELHTIK
QGATPLLEYLHRLEELFTELDVHPNAQLDYLTAGLRPDLQDYVYLRQFKK
YHEAVKALKLKESIRREKPLDERYRVIQSELTEIKEQLQQSRRQPAVTNQ
QADIAALLRENNRLKAELNMTNARRPREGCWTCGGSGHMANACPKKTPPT
CWQCGVPGHTARQCRNRPSEVKVVEKSQHAGPTVKVMVKGKMVSALCDSG
AQVSIVSGLLAKQLRLKVVGKSQNARGISGTSVKSLGEVELDTVIDGEKF
NGKFMVLEESSIQMIIGEDFLSRHRAILNLGERCLVLHKGQRRIEVGLQR
ETTSQAVAERRLYLPPQASTAWSFPAKQIREIEALPYAPIDVRVLTKSSE
GVRLIISNRTEDAVELKPGDVIGKWVHHDAEIEDPKSGVADDTHEMQDID
GGQKGKLEALIERNKDVFADSDLKLGATHLMEYDIDTGDAEPIKQSAYST
TPAKRAEIDKQIKELEEQGIIRRSQSSWSSPVLLVPKACGAMRMCIDYRR
LNAVTKKDAYPIPRVNDVLDQLGGAKYFSTCDLQSGFHQVPLTARSIPKT
AFVTHRGLFEYVRLPFGPSNGPSKFERLLEDIFRNELWDFVSIFIDDIII
HSKTFEEHLEHIQIVFQRLREAGLKMKRKKCHFCVPTLNFLGHEVSAEGI
KPKVDNVRKLLDAKKPTTTKQVQAFLGLTGYYRRFVPGYSEIARPLYKCV
PKFQWGEEQNKAWTTLIEKLTNPPLLEFPNFNKEFVLNTDASGLAIGYVL
SQTSDGEKPLPIRYGGRVLKDAEIRYTITEKELLSLVYAIRDCTQYLEGR
FFTVYTDHQPLTHALRFRDVSGRLSRWAVLLQQYTFEIRYKKGAKHSDAD
AMSRAPIQPVSEAFVGSIRLVPTTEVAAEQECDRQVMSHIERNRDEYAQD
ESGVWTHLTKRGKSVVHSLVVPQRFRADILDSIHKHPSGAHFGISKTVNK
VWQTYFWPGLYQDVVCYIEKCEGCRQHKGRSLKASLQSIPCTRPWADLTV
DILGPFHMTLSGNKYILTFVDRFTAWPEAFAIPSCESPVLAQILVDEIIS
RHGVPTTLLSDNGRNFVSNLMKEVCKILGITKITTTPYHCRTNGICERFH
RSVARSLAQYTDKQQEDWDKYLPMILFAYRTSVNESRNFSPFLLNYGYEA
TLPINTEFNRDDPDYLNLPAYAGWLKETLSEFWQASKENLEKSQLADHQR
NVQYESPYDVGDNVFVRKQKRTKGKSFKLEKIWLGPFIIKKAKHPIYQLA
MKGRPKWIHYDRLKRHSPTTEVEVGAPNSEAQNEVLRQGESEKEITQRVQ
ETMHESVVEGQQDETRLPEGQYQVESVVSHKKSGRTVKYRIRWSGYGPED
DTSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030870XLOC_030870Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048555TCONS_00048555Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR021109Peptidase_aspartic_dom
IPR005162Retrotrans_gag_dom
IPR000477RT_dom
IPR019103Peptidase_aspartic_DDI1-type
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
IPR000953Chromo/chromo_shadow_dom
IPR016197Chromodomain-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0015074DNA integration
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 161..181
NoneNo IPR availableCOILSCoilCoilcoord: 297..324
NoneNo IPR availableCOILSCoilCoilcoord: 274..294
NoneNo IPR availableGENE3D3.30.70.270coord: 760..851
e-value: 1.8E-28
score: 98.2
NoneNo IPR availableGENE3D3.10.10.10coord: 631..759
e-value: 6.6E-36
score: 122.5
NoneNo IPR availableGENE3D3.30.70.270coord: 852..975
e-value: 1.1E-34
score: 118.5
NoneNo IPR availableGENE3D2.40.50.40coord: 1507..1552
e-value: 1.0E-8
score: 34.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1468..1491
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1506..1529
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 936..1056
e-value: 4.9153E-47
score: 165.358
NoneNo IPR availableCDDcd01647RT_LTRcoord: 669..845
e-value: 2.70414E-83
score: 271.006
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 612..1041
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 350..366
e-value: 4.4E-4
score: 29.6
coord: 329..345
e-value: 0.0026
score: 27.0
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 359..382
e-value: 2.2E-4
score: 20.7
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 338..358
e-value: 5.1E-11
score: 41.9
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 349..365
e-value: 9.3E-4
score: 19.1
coord: 329..345
e-value: 7.7E-4
score: 19.3
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 281..337
e-value: 2.7E-5
score: 23.8
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 330..345
score: 9.752
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 351..366
score: 9.834
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 324..368
IPR021109Aspartic peptidase domainGENE3D2.40.70.10coord: 383..480
e-value: 3.0E-19
score: 68.8
IPR021109Aspartic peptidase domainSUPERFAMILY50630Acid proteasescoord: 376..479
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 152..237
e-value: 9.6E-7
score: 28.9
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 685..845
e-value: 1.1E-24
score: 87.1
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 666..845
score: 14.144
IPR019103Aspartic peptidase, DDI1-typePFAMPF09668Asp_proteasecoord: 384..478
e-value: 9.1E-9
score: 35.1
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 1186..1406
e-value: 1.1E-45
score: 155.2
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 1191..1343
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 1198..1305
e-value: 4.4E-19
score: 68.7
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1190..1361
score: 21.663
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 1522..1554
score: 8.521
IPR016197Chromo domain-likeSUPERFAMILY54160Chromo domain-likecoord: 1514..1552

Blast
[Close]
BLAST of TCONS_00048555-protein vs. Swiss-Prot (Human)
Match: NYNRI (Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.771e-26
Identity = 98/349 (28.08%), Postives = 162/349 (46.42%), Query Frame = 0 
Query: 1101 ESGVWTHLTKRGKSVVHSLVVPQRFRADILDSIHKHPSGAHFGISKTVNKVWQTYFWPGLYQDVVCYIEKCEGC--RQHKGRSLKASLQSIPC--TRPWADLTVDILGPFHMTLSGNKYILTFVDRFTAWPEAFAIPSCESPVLAQILVDEIISRHGVPTTLLSDNGRNFVSNLMKEVCKILGITKITTT---PYHCRTNGICERFHRSVARSLAQYTDKQQEDWDKYLPMILFAYRTSVNESRNFSPFLLNYGYEATL--PINTEFNRDDPDYLNLPAYAGWLKETLSEF-WQASKENLEKSQLADHQRNVQYESPYDVGDNVFVRKQKRTKGKSFKLEKIWLGPFII 1439
            ESG+   L  +G       VVP + R D++ S+H  P GAH    +T  K+    +WPG+ + V  Y   C  C  R   G  LK      P   T PW++L ++++GP  ++  G+K++L   D  T W EAF +       +AQ+L+  + +R GVP  L +  G  F  +++      LG    + +    + C T+      +    R+L ++     + W   LP++  A+R S   S + +PF +  G E+ L  P+  E +  + + L +  +   L   L E  W+ + +  EK++    +R  Q E  ++VGD V +    R  G S K    W+GPF I
Sbjct: 1519 ESGL---LMFKGDKKPRVWVVPTQLRRDLIFSVHDIPLGAHQRPEETYKKLRLLGWWPGMQEHVKDYCRSCLFCIPRNLIGSELKVIESPWPLRSTAPWSNLQIEVVGPVTISEEGHKHVLIVADPNTRWVEAFPLKPYTHTAVAQVLLQHVFARWGVPVRLEAAQGPQFARHVLVSCGLALGAQVASLSRDLQFPCLTSSGA---YWEFKRALKEFIFLHGKKWAASLPLLHLAFRAS---STDATPFKVLTGGESRLTEPLWWEMSSANIEGLKMDVFLLQLVGELLELHWRVADKASEKAENRRFKRESQ-EKEWNVGDQVLLLSLPR-NGSSAK----WVGPFYI 1852
The following BLAST results are available for this feature:
BLAST of TCONS_00048555-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NYNRI1.771e-2628.08Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3[more]
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