TCONS_00048562-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048562-protein
Unique NameTCONS_00048562-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048562-protein ID=TCONS_00048562-protein|Name=TCONS_00048562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
KLTQFLPAVRVMLLWMVDHSTLISKSSVNSMMDIWSEICPLFNHITNMEL
EEANGISSSEDSDNVYLIEDIFLAGFKPYSSKLVNGPANERLKDKVCHNL
RITSLQDLITQLDESGQLPFAYDEKEGSYKAVQATQVFTSPVKQKKEFDD
EGGDNMDITEDVIIEDSDDEQDQEEIELSGDHSQLDQLRAQKADLARQLE
ENEQKRQAAVAVLETHKSEGRVISENSPNHLVLDTNCFIDYLQYIQYLLS
SKGFTIIVPLIVINELDGLKKGTVLDTNRSSRVRNVRDAARQAIDFLEDR
FSVYDSNLRAITSSGSEMTTIAFRSEELSQDRGTNDDVILSCCLKYCKEH
FSYEGTSKIVRREVVLLTNDRNLRVKAHSRYVPTVPMVTFMKMAQLL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030877XLOC_030877Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048562TCONS_00048562Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002716PIN_dom
IPR029060PIN_domain-like
IPR018834DNA/RNA-bd_Est1-type
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 185..219
IPR002716PIN domainSMARTSM00670PIN_9coord: 229..375
e-value: 3.1E-19
score: 79.9
IPR002716PIN domainPFAMPF13638PIN_4coord: 231..384
e-value: 3.3E-26
score: 92.1
IPR029060PIN domain-likeGENE3D3.40.50.1010coord: 228..397
e-value: 3.9E-35
score: 120.9
IPR029060PIN domain-likeSUPERFAMILY88723PIN domain-likecoord: 329..389
coord: 228..299
IPR018834DNA/RNA-binding domain, Est1-typePFAMPF10373EST1_DNA_bindcoord: 3..80
e-value: 2.1E-6
score: 27.3
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 4..131

Blast
[Close]
BLAST of TCONS_00048562-protein vs. Swiss-Prot (Human)
Match: EST1A (Telomerase-binding protein EST1A OS=Homo sapiens GN=SMG6 PE=1 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 4.643e-60
Identity = 152/416 (36.54%), Postives = 223/416 (53.61%), Query Frame = 0 
Query:    2 LTQFLPAVRVMLLWMVDHSTLISKSSV------NSMMDIWSEICPLFNHITNMELEEANGISSSEDSDNVYLI--EDIFLAGFKPYSSKLVNGPAN----ERLKDKV----CHNLRITSLQDLITQLDESGQLPFAYDEKEGSYKAVQATQVFTSPVKQKKEFDDEGGDNMDITEDVIIEDSDDEQDQEEIELSGDHSQLDQLRAQKADLARQLEENEQKRQAAVAVLETHKSEGRVISENSPNHLVLDTNCFIDYLQYIQYLLSSKGFTIIVPLIVINELDGLKKGTVLDTNRSSRVRNVRDAARQAIDFLEDRFSVYDSNLRAITSSGSEMTTIAFRSEELSQDRGTNDDVILSCCLKYCKEH---FSYEGTSKIVR--REVVLLTNDRNLRVKAHSRYVPTVPMVTFMKMAQL 396
            L + LP+V+V   WM+ +    +          +  +D+WS +    N +T +   E   +    D D   LI  ED  L+GF P    L+  P +    E+  DKV    C   R+T L+  +  L   GQ     +E   ++K  +   V   P    KE   + G  ++  E+ ++ +  +E    E E SG    + +LRA+K  LAR++ E +++++   AVLE H    ++  E  P  LV DTN FID+L  +  LL S+ + ++VPLIVINELDGL KG   D       R V++ AR++I+FLE RF   DS LRA+TS G+E+ +IAFRSE+++   G NDD+ILSCCL YCK+    F      + +R  REVVLLT+DRNLRVKA +R VP   +  F+  AQ+
Sbjct: 1019 LKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVWSTLADFCNILTAVNQSEVP-LYKDPDDDLTLLILEEDRLLSGFVP----LLAAPQDPCYVEKTSDKVIAADCK--RVTVLKYFLEAL--CGQ-----EEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGTRLEDEEEDVVIEDFEEDS--EAEGSGGEDDIRELRAKKLALARKIAEQQRRQEKIQAVLEDHSQMRQMELEIRPLFLVPDTNGFIDHLASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQRFESRDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQV 1418
The following BLAST results are available for this feature:
BLAST of TCONS_00048562-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EST1A4.643e-6036.54Telomerase-binding protein EST1A OS=Homo sapiens G... [more]
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