TCONS_00048571-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048571-protein
Unique NameTCONS_00048571-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048571-protein ID=TCONS_00048571-protein|Name=TCONS_00048571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MSENRKRKKAFYKGKYGGKKGKYQNDLRPKLKGFIITVNGQEKNARGEAY
RLLNEYADKRYGPEQLDEAGKESGDENEQDIEASLKQEVSNIKAAKDKDR
RFQIIQNKAKNVLFVKADIEDPNQLALDIFADLSANGVAKTRHCCRLLPV
IDTCYAKLNHIVEAAKPILKTLFTESQTPFSTYCMTWKVRCNDTLKRDEV
YGELLEYIKQFEGDYEACYIDPDVVIDMNIIGNICCFGVLRKWNQYSKYN
LDAIIKKVNKEVGGGDQADVGEDKAKNVETEAKASEENVQSIDAKSETGA
ESKSDNAETEAKAENDQPVTVTDDGSSYSEVKQVENVTNDESSKEAIAQE
TEKKNELNEGKHEV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030882XLOC_030882Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048571TCONS_00048571Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004114THUMP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 268..295
NoneNo IPR availableGENE3D3.30.2300.10coord: 154..242
e-value: 4.2E-11
score: 42.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..80
NoneNo IPR availableCDDcd11717THUMP_THUMPD1_likecoord: 93..241
e-value: 2.2888E-29
score: 110.366
NoneNo IPR availableSUPERFAMILY143437THUMP domain-likecoord: 157..240
IPR004114THUMP domainPFAMPF02926THUMPcoord: 81..240
e-value: 7.1E-6
score: 26.1

Blast
[Close]
BLAST of TCONS_00048571-protein vs. Swiss-Prot (Human)
Match: THUM1 (THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.347e-37
Identity = 85/253 (33.60%), Postives = 135/253 (53.36%), Query Frame = 0 
Query:   27 LRPKLKGFIITVNGQEKNARGEAYRLLNEYADKRYGPEQL-DEAGKESGDENE-QDIEASLKQEVSNIKAAKD-KDRRFQIIQNKAKNVLFVKADIEDPNQLALDIFADLSANGVAKTRHCCRLLPVIDTCYAKLNHIVEAAKPILKTLFTESQTPFSTYCMTWKVRCNDTLKRDEVYGELLEYIKQFEGDYEACYIDPDVVIDMNIIGNICCFGVLRKWNQYSKYNLDAIIK------KVNKEVGGGDQADV 270
            L P L+G +IT N  E+    EAY LLNEY D  YGPE+  D+  + SG E E  D EA+LK+EV +IKA+ + + RRFQ +++ A NV+F++    +P +L   I  D+      KTR   R+LP+  TC A L  + + A+  L+  F        T+ + +K R N  + R+EV  EL   +     + +    +P   + + II  +CC  V++ +  + KYNL  ++K      ++N + G G +A +
Sbjct:   39 LEPGLQGILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFTDKDQQPSGSEGEDDDAEAALKKEVGDIKASTEMRLRRFQSVESGANNVVFIRTLGIEPEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWFKAPNK--GTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEVVKSPKDPSQLNSKQGNGKEAKL 289
The following BLAST results are available for this feature:
BLAST of TCONS_00048571-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
THUM12.347e-3733.60THUMP domain-containing protein 1 OS=Homo sapiens ... [more]
back to top