TCONS_00048668-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048668-protein
Unique NameTCONS_00048668-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length112

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048668-protein ID=TCONS_00048668-protein|Name=TCONS_00048668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MAPVKKKSNESINSRLALVMKSGKYTLGYRSTLKTLRQGKSKLVIIGSNT
PQLRKSEIEYYAMLSKTGVHHYTGNNIELGTACGKYFRVSVLSITDPGDS
DIIRSMPSEETK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030925XLOC_030925Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048668TCONS_00048668Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR022991Ribosomal_L30e_CS
IPR000231Ribosomal_L30e
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 1..103
e-value: 5.8E-23
score: 80.5
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 10..104
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 11..103
e-value: 1.4E-23
score: 82.3
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00993RIBOSOMAL_L30E_2coord: 78..98
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00709RIBOSOMAL_L30E_1coord: 22..46
IPR000231Ribosomal protein L30eHAMAPMF_00481Ribosomal_L30ecoord: 10..107
score: 21.938

Blast
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BLAST of TCONS_00048668-protein vs. Swiss-Prot (Human)
Match: RL30 (60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 2.093e-59
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0 
Query:    6 KKSNESINSRLALVMKSGKYTLGYRSTLKTLRQGKSKLVIIGSNTPQLRKSEIEYYAMLSKTGVHHYTGNNIELGTACGKYFRVSVLSITDPGDSDIIRSMPSE 109
            KKS ESINSRL LVMKSGKY LGY+ TLK +RQGK+KLVI+ +N P LRKSEIEYYAML+KTGVHHY+GNNIELGTACGKY+RV  L+I DPGDSDIIRSMP +
Sbjct:    8 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 111
The following BLAST results are available for this feature:
BLAST of TCONS_00048668-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL302.093e-5978.8560S ribosomal protein L30 OS=Homo sapiens GN=RPL30... [more]
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