TCONS_00048689-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048689-protein
Unique NameTCONS_00048689-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048689-protein ID=TCONS_00048689-protein|Name=TCONS_00048689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MGDSDEDRRGGRRDKFRGERNDYDNRRPAPRGYNDRGRGDRGGWQDRKRD
YYGNRGDNRGDRRDNFQNRGGSPPYKRNKNDGDDNQWNRGGDSNAMNPPE
KPNTGSPHLMSFKDFVSQQEDDINEEQAVQRYQEYKVEFKRTQINDFFVI
KKKDEWFEERYHPVKGQKRQSFIRHGHRRRLRIFLDLWEQGFIDELSLQI
TYSPAVLKLLDRVVILLEGGTEEDLKALEEAPKSITGANSQPAVANVAKP
EEKKEEPKPAGDEKPKDYTYDADVTEEDDEGIGKEPLPPGMDEDDDDIKP
PGLDEEEDKGTQERGN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030935XLOC_030935Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048689TCONS_00048689Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021933DUF3546
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021933Protein of unknown function DUF3546PFAMPF12066DUF3546coord: 113..222
e-value: 1.0E-30
score: 106.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..316

Blast
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BLAST of TCONS_00048689-protein vs. Swiss-Prot (Human)
Match: SRRT (Serrate RNA effector molecule homolog OS=Homo sapiens GN=SRRT PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.159e-22
Identity = 82/261 (31.42%), Postives = 118/261 (45.21%), Query Frame = 0 
Query:   20 RNDYDNRRPAPRGYNDRGRGDRGGWQDRK-------------RDYYGNRGDNRGDRRDNFQNRGGSPPYKRNKNDGDDNQ--------------------------WNRGGDSNAMN---PPEKPNTGS----------PHLMSFKDFVSQQEDDINEEQAVQRYQEYKVEFKRTQINDFFVIKKKDEWFEERYHPVKGQKRQSFIRHGHRRRLRIFLDLWEQGFIDELSLQITYSPAVLKLLDRVVILLEGGTEEDLKAL 228
            R+DYD  R          R     W DR+             RDY  NR +     R        SPP KR + D D++                           W    D + M     P +   GS          P + +FK+F+   +D ++E +AV+RY +YK++F+R Q+ DFF+  K +EWF  +YHP +  KR+   R   + RLR+FL L E G+ D L L I  + A++K+LD  VI +EGGTE DL+ L
Sbjct:   20 RSDYDRSR------ERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRERFSPPRHEL-----SPPQKRMRRDWDEHSSDPYHSGYEMPYAGGGGGPTYGPPQPWGH-PDVHIMQHHVLPIQARLGSIAEIDLGVPPPVMKTFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRRQEARGALQNRLRVFLSLMETGWFDNLLLDIDKADAIVKMLDAAVIKMEGGTENDLRIL 268
The following BLAST results are available for this feature:
BLAST of TCONS_00048689-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRRT1.159e-2231.42Serrate RNA effector molecule homolog OS=Homo sapi... [more]
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