Overview
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00048843-protein ID=TCONS_00048843-protein|Name=TCONS_00048843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2295bpRun BLAST on NCBI Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
Blast
BLAST of TCONS_00048843-protein vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 1.943e-37 Identity = 128/490 (26.12%), Postives = 224/490 (45.71%), Query Frame = 0 Query: 338 DLGFILDESGSISVSDFKKETDFVRQMTLPFNIGVKNTRVSLITYSSGVRFHFKLRDYQGYNKDGLHQALNRLYRKGGGTNTMQALKDANSKMFTVESGARPDISKVLVVITDGRSNGGVSSVRKPADDLKKNHVNIFAVGAGNNVNSHELNAIAS--SSDHVMRISSINALQGILGKLQSAVCKEIECKYKECVY--QNWSPWSQTCGATSRSRQLKMAYNRTKIQHGGCSGLLTSCENMEKEQ-----------------------------KTLDKCPPYNTPEK--------ECT------LDLGAILDESGSIGSNTNYRKETNFIKDLAKELTIGPSNTRVSVITFSSAARLRFKFNDYEGYNRKALYNALDGLRWSKGGTQTVKALQLAQKHMFSEANGQRKDVSKVLLVVTDGRSATGASNIKRASDALSKQGVNIIAIGVGAAYQTELKALATD--DSNVFKVGSLSELKNALWSVKRASC 778 DL F++D S S+ ++FK DF+ + F+IG + TRV ++ YSS R F L Y Y +D L A+ ++ KGG T T A+ FT +GAR KV ++ITDG+S V PA +L+ V +F++G ++ EL IAS S +HV +++ +A+ I ++ S VC ++ + E V + P S S+ +K+ +N + G +LT ++ K + P + EK EC+ D+ ++D S SIG N+ K F++ L K I P+ ++S++ +S F + + + A++ + G T T KA+ ++ +F + G R +V KV++++TDG+S+ + + L V I A+GV A ++EL+A+A+ +++VF V + + + ++ C Sbjct: 140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQY--YQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQ---DEVEIPARELRNVGVEVFSLGI-KAADAKELKQIASTPSLNHVFNVANFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYVKLNWNPSPSPVTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEYQISVSAMKGMTSSEPISIMEKTQPMKVQVECSRGVDIKADIVFLVDGSYSIGI-ANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFT--KVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDA---FRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVEDFDAFQRISFELTQSIC 617 HSP 2 Score: 107.071 bits (266), Expect = 1.129e-22 Identity = 68/202 (33.66%), Postives = 108/202 (53.47%), Query Frame = 0 Query: 325 KTFVECPKA-SCKLDLGFILDESGSISVSDFKKETDFVRQMTLPFNIGVKNTRVSLITYSSGVRFHFKLRDYQGYNKDGLHQALNRLYRKGGGTNTMQALKDANSKMFTVESGARPDISKVLVVITDGRSNGGVSSVRKPADDLKKNHVNIFAVGAGNNVNSHELNAIAS--SSDHVMRISSINALQGILGKLQSAVCKEIE 523 K VEC + K D+ F++D S SI +++F K F+ + F I ++SL+ YS F L+ + + + +A+N +GG TNT +A+ K+F G+R ++ KV+++ITDG+S+ + R PA L+ + V IFAVG + V S EL AIAS + HV + +A Q I +L ++C IE Sbjct: 426 KVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFT--KVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSS---DAFRDPAIKLRNSDVEIFAVGVKDAVRS-ELEAIASPPAETHVFTVEDFDAFQRISFELTQSICLRIE 621 HSP 3 Score: 89.3521 bits (220), Expect = 2.213e-17 Identity = 76/236 (32.20%), Postives = 110/236 (46.61%), Query Frame = 0 Query: 335 CKLDLGFILDESGSISVSDFKKETDFVRQMTLPFN-IGVKNTRVSLITYSSGVRFHFKLRDYQGYNKDGLHQALNRLYRKGGGTNTMQALKDANSKMFTVESGARPDISKVLVVITDGRSNGGVSSVRKPADDLKKNHVNIFAVGAGNNVNSHELNAIAS--SSDHVMRISSINALQGILGKLQSAVCKEIECKYKECVYQNWSPWSQTCGATSRSRQLKMAYNRTKIQHGGCSGL 567 K D+ F+ D S SI +F K F+ F+ I +VS + YS V+ FKL Y +K AL + +GG T T +AL K+ T ESG R ++ KVLVV+TDGRS V+K A ++++ ++F VG +V+ +EL IAS S HV + + + I L + VC E C P G TS ++ AYN T+ G+ Sbjct: 2320 AKADIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYN--DKALALGALQNIRYRGGNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQ---DEVKKAALVIQQSGFSVFVVGVA-DVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVC---ETATSSC------PLIYLDGYTSPGFKMLEAYNLTEKNFASVQGV 2540 HSP 4 Score: 85.5001 bits (210), Expect = 3.564e-16 Identity = 58/191 (30.37%), Postives = 96/191 (50.26%), Query Frame = 0 Query: 335 CKLDLGFILDESGSISVSDFKKETDFVRQMTLPFNIGVKNTRVSLITYSSGVRFHFKLRDYQGYNKDGLHQALNRLYRKGGGTNTMQALKDANSKMFTVESGARPDISKVLVVITDGRSNGGVSSVRKPADDLKKNHVNIFAVGAGNNVNSHELNAIASSSD--HVMRISSINALQGILGKLQSAVCKEIE 523 + D+ ++D S SI ++F+ F+ ++ F+IG K +++L YS R ++L ++ +K L QA+ L KGG T T AL + F ++G RP K+ V+ITDG+S V P+ LK V +FA+G N + EL IA+ D H ++ +L I+ L +C ++ Sbjct: 1196 AEADIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHR--DKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQ---DDVEAPSKKLKDEGVELFAIGI-KNADEVELKMIATDPDDTHAYNVADFESLSRIVDDLTINLCNSVK 1380 The following BLAST results are available for this feature:
BLAST of TCONS_00048843-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens)) Total hits: 1
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