TCONS_00048850-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048850-protein
Unique NameTCONS_00048850-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048850-protein ID=TCONS_00048850-protein|Name=TCONS_00048850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
PPCFRLQSLFISSDNFCGFISSDSFTEVRQTDRKMKILNILIILVNYLVV
STNANCDLDLGFIIDESGSITSTDFKKSIDFVKSVTQQFNVDTYKTRVSI
ITFSNDAVQHFAFRDWYGYSRQGLDYYLPRIRQRGGGTYTNKALDLARTK
MYTLNSGERHDKVNVLVVISDGKSQSGSSVLKAAADTLRNSGVNILAVGV
GSGINNNELNIISGSYSNIFSVTNAYYLTSIVSKIKSVSCKAVTCHYKDC
HYRSWSSWSATCGQATRTRSFYYSSSRSKTQVSGCAGLRTTCQSKESETK
QLAACPLYSSARCTVKNCYYYSWSSWSASCGSVSRSRRYYYSSSSTVTVA
SSSQCAQYKTSCEN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031044XLOC_031044Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048850TCONS_00048850Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00453VWFADOMAINcoord: 165..173
score: 49.15
coord: 58..75
score: 41.24
coord: 97..111
score: 23.59
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 58..217
e-value: 3.07827E-36
score: 129.334
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 57..233
e-value: 4.0E-33
score: 126.0
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 51..247
e-value: 1.8E-32
score: 112.3
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 59..231
e-value: 5.2E-33
score: 114.7
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 59..235
score: 28.216
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 55..245

Blast
[Close]
BLAST of TCONS_00048850-protein vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.576e-18
Identity = 57/187 (30.48%), Postives = 97/187 (51.87%), Query Frame = 0 
Query:   59 DLGFIIDESGSITSTDFKKSIDFVKSVTQQFNVDTYKTRVSIITFSNDAVQHFAFRDWYGYSRQGLDYYLPRIRQRGGGTYTNKALDLARTKMYTLNSGERHDKVNVLVVISDGKSQSGSSVLKAAADTLRNSGVNILAVGVGSGINNNELNIISG--SYSNIFSVTNAYYLTSIVSKIKSVSCKAV 243
            DL F++D S S+   +FK  +DF+ ++   F++   KTRV ++ +S+D    F    +  Y R  L   + +I  +GG T T  A+D      +T ++G R     V ++I+DGKSQ    +    A  LRN GV + ++G+ +  +  EL  I+   S +++F+V N   +  I ++I S  C  V
Sbjct:  140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQY--YQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQDEVEI---PARELRNVGVEVFSLGIKAA-DAKELKQIASTPSLNHVFNVANFDAIVDIQNEIISQVCSGV 320
The following BLAST results are available for this feature:
BLAST of TCONS_00048850-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COCA11.576e-1830.48Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL... [more]
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