TCONS_00048997-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048997-protein
Unique NameTCONS_00048997-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048997-protein ID=TCONS_00048997-protein|Name=TCONS_00048997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp
MQNLALPDLRRQILEDVLGDSVEEYENFNKEEAESKRQHRQRIPLWQFLL
HLLNRDTNERYIQWSKEYELEFRIKDTVGVAELWGSVKNKTDMTYEKLGR
AMRYYYGKSIIEKVTGRRYSYRFILSRRTKKYLSQFINVTQMTIQPASES
DHEINEDNAMSPRMADENNNKRRKTVSVSSPPPRERTQKDYRTEYSRSPS
SQLSCPTAITKTKIFRPDESLSRYFATADPSIPQEKVTKEEKISTPLKIR
DTRNSIIYHDSTQRRSAFFVPEKSVSITRENAPSLIQALQTMPLSPVSSE
TQVTRSPTYQENRKRSYPYPTKSSIREKNAIAYCCCGSHNCKIKYVDYAS
EESECESSYSRESISPIAVMEKPKKTTASMMNSRTNYIDSYGLHDFHEES
IRKELRELKDYREREKNEIMIMKQSLGGSKLDPFMGYKDAGPLMDDF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031121XLOC_031121Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048997TCONS_00048997Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000418Ets_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 394..418
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..320
IPR000418Ets domainPRINTSPR00454ETSDOMAINcoord: 68..86
score: 35.75
coord: 43..56
score: 53.09
coord: 87..105
score: 60.08
coord: 106..124
score: 45.05
IPR000418Ets domainSMARTSM00413etsneu2coord: 42..128
e-value: 2.4E-35
score: 133.4
IPR000418Ets domainPFAMPF00178Etscoord: 45..124
e-value: 1.4E-28
score: 99.1
IPR000418Ets domainPROSITEPS00345ETS_DOMAIN_1coord: 45..53
IPR000418Ets domainPROSITEPS50061ETS_DOMAIN_3coord: 43..124
score: 28.441
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 27..154
e-value: 3.9E-33
score: 113.4
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 42..147

Blast
[Close]
BLAST of TCONS_00048997-protein vs. Swiss-Prot (Human)
Match: ELK1 (ETS domain-containing protein Elk-1 OS=Homo sapiens GN=ELK1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.591e-21
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:   45 LWQFLLHLLNRDTNERYIQWSKEYELEFRIKDTVGVAELWGSVKNKTDMTYEKLGRAMRYYYGKSIIEKVTGRRYSYRFI 124
            LWQFLL LL    N   I W+     EF++ D   VA LWG  KNKT+M Y+KL RA+RYYY K+II KV+G+++ Y+F+
Sbjct:    7 LWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFV 86
The following BLAST results are available for this feature:
BLAST of TCONS_00048997-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELK11.591e-2151.25ETS domain-containing protein Elk-1 OS=Homo sapien... [more]
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