TCONS_00049005-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049005-protein
Unique NameTCONS_00049005-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length172

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049005-protein ID=TCONS_00049005-protein|Name=TCONS_00049005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MGCAFCKDPNQSNKNDSGEPDERSRLLDNQHQPSATKPITDDSNYHSTNS
ITKTDEQSQLSRILHKTAQNIIDVSAIEPHSMERSEYMDKMRHYIEKTTN
SDFNFSKQKQLNQVTHAPLNILLAPNISASDIKLITEASHNVSGALSQAK
ITCSDSLVENFDVDNSPVPVVT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031129XLOC_031129Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049005TCONS_00049005Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028209LAMTOR1/MEH1
Vocabulary: Biological Process
TermDefinition
GO:0032008positive regulation of TOR signaling
GO:0001919regulation of receptor recycling
GO:0042632cholesterol homeostasis
GO:0032439endosome localization
GO:0007040lysosome organization
GO:0043410positive regulation of MAPK cascade
GO:0071230cellular response to amino acid stimulus
Vocabulary: Cellular Component
TermDefinition
GO:0045121membrane raft
GO:0031902late endosome membrane
GO:0071986Ragulator complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071230 cellular response to amino acid stimulus
biological_process GO:0042632 cholesterol homeostasis
biological_process GO:0032439 endosome localization
biological_process GO:0007040 lysosome organization
biological_process GO:0043410 positive regulation of MAPK cascade
biological_process GO:0032008 positive regulation of TOR signaling
biological_process GO:0001919 regulation of receptor recycling
cellular_component GO:0031902 late endosome membrane
cellular_component GO:0045121 membrane raft
cellular_component GO:0071986 Ragulator complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028209LAMTOR1/MEH1SMARTSM01262LAMTOR_2coord: 20..96
e-value: 5.4E-18
score: 75.8
IPR028209LAMTOR1/MEH1PFAMPF15454LAMTORcoord: 21..90
e-value: 2.3E-17
score: 63.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58

Blast
[Close]
BLAST of TCONS_00049005-protein vs. Swiss-Prot (Human)
Match: LTOR1 (Ragulator complex protein LAMTOR1 OS=Homo sapiens GN=LAMTOR1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 7.764e-22
Identity = 59/167 (35.33%), Postives = 89/167 (53.29%), Query Frame = 0 
Query:    1 MGCAFCKDPNQSNKNDSGEPDERSRLLDNQHQPSATKPITD-DSNYHSTNSITKTDEQSQLSRILHKTAQNIIDVSAIEPHSMERSEYMDKMRHY---IEKTTNSDFNFSKQKQLNQVTHAPLNILLAPNISASDIKLITEASHNVSGALSQAKITCSDSLVENFDV 163
            MGC +  +    N++   + +ER  LLD    P  TK +   + NYHS  S  +TDEQ+ LS IL KTA NIIDVSA +   ME+ EYMD+ R Y   +   ++S  ++ K   L  +T  P  +L +  I  SD++ ++  +     ALSQ ++   + LV  F +
Sbjct:    1 MGCCYSSE----NEDSDQDREERKLLLDPSSPP--TKALNGAEPNYHSLPS-ARTDEQALLSSILAKTASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLASEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGI 160
The following BLAST results are available for this feature:
BLAST of TCONS_00049005-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LTOR17.764e-2235.33Ragulator complex protein LAMTOR1 OS=Homo sapiens ... [more]
back to top