TCONS_00049254-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049254-protein
Unique Name	TCONS_00049254-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	822

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049254-protein ID=TCONS_00049254-protein|Name=TCONS_00049254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=822bp
MYKLSIIVIIGLTIIPDLALSADKKIQIGLYNPDEDGKDRSVAATVLTAI
DVIKEQNKILKGYQIEAYLYYAQQHTFGSAVWAALNNLGLNLTNYPMELK
KAEANNQSKVRVNYQGPKEFGTTLNPIAMLGPRSTFDTRTMYPVYTTRNI
LHISFDAAGESLSVVKDYPYLFNSAPPVFLYVKALVQYLVHFNLDKIAFI
HYSDQSKSFNSNKLTADRFEREAAENGINIVYVGEIRFDEFTDKSQYSSY
FSNAFNAIKKNDIRVIVFSLTDEAMRTMICEAYRLGLYGSKYQFISILAE
GMTSWVKEWKTVNCSEETQRFMSRNIIGLSRSPREKVETITEVGLTKKEI
WTRIQNKMTEILSQPIPYDEWLAYVFDSVLAFALALDKILKRDPSFVENH
KVGTLDPARMNTMLNEIRQLDFIGASGRFKYKQDGDFLYRDGNIRYRKLK
FKGNETKSGLEAIGLFDKDTSKITMNFSQLYYKQIPRAGPEHIENIVLLP
QSVVYTMWILSGLGIIISLIFLTVNIYYRDVTYIKLSSPNINSLTCIGSI
LLYGAVICYGFDSRYVSEHSVAYMCNITTFMLSMGFTLTFGSLFSKTWRI
YRIFTRAEAARYVVIKDIHLFTVVFLMLVVDAVLCFTWMGVSPFTLTSQL
LSSLRDVKADTIENDIIHRCQCEYQSHFIFATFAYKGILMVFGLFVAYET
KRIKVAAINDSKHIGLAVYNVCLFSALGSIVVFCLYDTDRFQEGYIFFGA
CILEITTVTLCLVFVPKVLMLLTNFEDPNFKKGRPVFNPTAQPSADDTNT
NSQWSTTNSQCAMTTSTKSLNF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031269	XLOC_031269	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049254	TCONS_00049254	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR002456	GPCR_3_GABA_rcpt_B1
IPR001828	ANF_lig-bd_rcpt
IPR017978	GPCR_3_C
IPR028082	Peripla_BP_I

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0004965	G-protein coupled GABA receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004965	G-protein coupled GABA receptor activity
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 583..604 score: 35.23 coord: 620..643 score: 20.18
None	No IPR available	PRINTS	PR01176	GABABRECEPTR	coord: 542..563 score: 39.26 coord: 709..732 score: 36.36 coord: 503..526 score: 33.33 coord: 624..649 score: 27.62 coord: 594..611 score: 34.34 coord: 575..594 score: 40.0 coord: 169..188 score: 25.0
None	No IPR available	GENE3D	3.40.50.2300		coord: 24..437 e-value: 5.9E-25 score: 87.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 791..822
IPR002456	GPCR family 3, gamma-aminobutyric acid receptor, type B1	PRINTS	PR01177	GABAB1RECPTR	coord: 371..389 score: 36.84 coord: 544..565 score: 36.36 coord: 502..527 score: 34.62 coord: 713..735 score: 30.43
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 43..438 e-value: 1.3E-34 score: 119.8
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 515..769 e-value: 3.9E-45 score: 154.4
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 510..776 score: 24.333
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 24..91 coord: 124..439

Blast

[Close]

BLAST of TCONS_00049254-protein vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.556e-70
Identity = 179/672 (26.64%), Postives = 323/672 (48.07%), Query Frame = 0

Query:  149 NILHISFDAAGESLSVVKDYPYLFNSAPPVFLYVKALVQYLVHFNLDKIAFIHYSDQSKSFNSNKLTADRFEREAAENGINIVYVGEIRFDEFTDKSQYSSYFSNAFNAIKKNDIRVIVFSLTDEAMRTMICEAYRLGLYGSKYQFISILAEGMTSWVKEWKTVNCSEETQRFMSRNI-------IGLSRSPREKVETITEVGLTKKEIWTRIQNKMTEILSQPIPYDEWLAYVFDSVLAFALALDKILKRDPSFVENHKVGTL---DPARMNTMLNEIRQLDFIGASGRFKYKQDGDFLYRDGNIRYRKLKFKGNETKSG-LEAIGLFDKDTSKITMNFSQLYYKQIPRAGPEHIENIVLLPQSVVYTMWILSGLGIIISLIFLTVNIYYRDVTYIKLSSPNINSLTCIGSILLYGAVICYGFDSRYVSEHSVAYMCNITTFMLSMGFTLTFGSLFSKTWRIYRIFTRAEAARYVVIKDIHLFTVVFLMLVVDAVLCFTWMGVSPFTLTSQLLSSLRDVKADTIE-NDIIHRCQCEYQSHFIFATFAYKGILMVFGLFVAYETKRIKVAAINDSKHIGLAVYNVCLFSALGSIVVFCLYDTDRFQEGYIFFGACILEITTVTLCLVFVPKVLMLLTNFEDPNFKKGRPVFNPTAQPSADDTNTNSQWSTTN 808
            N++ +SF A    L+  K YPY F + P       A+++ L H+   ++  +    Q  S   N LT              ++Y  +I   E +D   +S+    +   +K ND+R+I+          + C AY   +YGSKYQ+I I      SW   W+ V+    + R + +N+       IG+   P    +  T  G T ++      NK + +        ++  Y +D +   A  L + ++   +   + ++      D      +LN + + +F G +G+  ++ +G+   R G I++ + +    E K G   A+     DT +I  +  +    + P+     +E +  +   +   +  L+ LG+I++  FL  NI  R+   IK+SSP +N+L  +G +L Y ++  +G D  +VSE +   +C + T++L++G+T  FG++F+KTWR++ IF   +  +  +IKD  L  +V  ML++D  +   W  V P   T +  S   D     I    ++  C+  + + ++   +AYKG+LM+FG F+A+ET+ + + A+NDSK+IG++VYNV +   +G+ V F   D    Q  +      I+  +T+TLCLVFVPK++ L TN   P+       F  T     +D+ T++  ++ N
Sbjct:  150 NLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTG-------------VLYGEDI---EISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWI-IPGWYEPSW---WEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGP-----SKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFR-NGE---RMGTIKFTQFQ-DSREVKVGEYNAVA----DTLEIINDTIRFQGSEPPKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVKMKKK-IIKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFLTRDQPNVQ--FCIVALVIIFCSTITLCLVFVPKLITLRTN---PDAATQNRRFQFTQNQKKEDSKTSTSVTSVN 781

The following BLAST results are available for this feature:

BLAST of TCONS_00049254-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049254-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GABR2	1.556e-70	26.64	Gamma-aminobutyric acid type B receptor subunit 2 ...	[more]

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TCONS_00049254-protein (polypeptide) - C. hemisphaerica