TCONS_00049871-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049871-protein
Unique NameTCONS_00049871-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1282

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049871-protein ID=TCONS_00049871-protein|Name=TCONS_00049871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1282bp
MMXQCTLQLTYSILSMLYDEDRCSIIVGAVGCLQQWKLTNGVHQTPHMQR
EIELTDDFSGITPWISFIHYNKDQNVYIALSGTALFFIDAIRFEQTAFVE
NRHAYPLTVCYAYVPSKYLVTGAKNGDIKVWNMSMYSLPYVGCFNGHLKK
IVCIVAHPNEPLLITASDDSTIRFWRIETFQETYRFDVLDTIHDLRLVGP
RKLYYTSQKYICLLDFNYFHSIFTLVGAKCLSLSRYAPGPDQPARIMIVG
DDGGVRIISPTHGNILTMLFPVVTHRPVSYTHDPMEHRLYVRLHDGDVMV
VSSKSNPCRTVKIWKARCDDEQVVSMCVLFLDVGADKKSILLGAHLDGCI
SLLKARGLEMKKVSPARGIITQFQSNTVQHSYADFLTYNTENTITLWKVR
TIGPGLIDLNMIDDIQIEGVPTHISFRGDFFALSHENRLVTYHVDFKKRG
FCAGHVTLFKHTKDEQHTKSITQLTSCSNLAIFATSSLDGHIKIWDTQCH
LLRELVFDSTLSGVCFANGHGDLLVGFQSNLHYVPVLEYLPYGYLQTLLE
TEVPDDRTEFCISFDPLLKFWYDPDRVETVGMNETNQRCEEGDSLVQRFT
GLCPAAADLVSVRQSRQTNIRESHYKFDALHDIAELTHRQPKKTIIDKET
LKSSRRNSLIPTSSLVWVGSEPSSRRESEDHSEQTPTIQSTENMPLSTAL
ANEIMTILSVDSLPPKDADENADTAFLLEEEDGKKFWPCAPDGFIPNSII
RKLIAPKKPEWDDAEPWRPKSLDMLGSLKHEELECPTPEEESDDEVRVWL
SADEEEDEEETSNSMDSLSYFLKQERRRSSQGSSKSKRVKKSSPSSTPTT
PKKSFKKTAKTVAIVAKPLNRKRKSVSRGKKKRGRTGEKGSISETEESER
SEGTEEFDEEEEGNDLPDLPEFELNAIPETPSPPPSIGPIPKKISLNTFF
KKFRKKKWFPKDVDHSNYNKIARRCLDELDEIKPFELREIVDFLAELHII
EPLSENCLDTVIKKLLSILDNKSGQVRHYAVQALLKLGENRKDVIIRLVQ
GLDDPVVTVREEVKMVLSAMCGITCADTLVTILEEIGEYQEYPMSNDADV
VETFHSTIISRQHLVLRRATLENNRREQRQSIFNWLHKHQSAEEVARKVR
KLSDEYQEKQRKKERRKEKIKKKVIKNWTATMPNTKAKAATKGWKKPANE
KERIDNIVQKTKYKGEKKRRGKKKTNEVEEEDDSXRNDVLRKRPMMLKRR
RTIPLMSLNHLIHHQHHMFSLTRYLLRYRSST
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031624XLOC_031624Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049871TCONS_00049871Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR011989ARM-like
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1139..1173
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 92..132
e-value: 22.0
score: 8.5
coord: 137..176
e-value: 4.8E-6
score: 36.1
coord: 457..496
e-value: 0.0077
score: 25.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 142..175
e-value: 6.6E-5
score: 23.5
coord: 466..496
e-value: 0.0054
score: 17.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 144..185
score: 13.884
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 464..496
score: 10.141
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 3..294
e-value: 8.0E-25
score: 86.9
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 295..529
e-value: 7.3E-11
score: 41.0
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 530..1092
e-value: 1.9E-8
score: 33.1
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 119..133
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 100..185
score: 16.612
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 464..505
score: 9.046
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 57..318
coord: 466..498
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 278..528
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 964..1090

Blast
[Close]
BLAST of TCONS_00049871-protein vs. Swiss-Prot (Human)
Match: WDR87 (WD repeat-containing protein 87 OS=Homo sapiens GN=WDR87 PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.079e-33
Identity = 139/573 (24.26%), Postives = 240/573 (41.88%), Query Frame = 0 
Query:   11 YSILSMLYDEDRCSIIVGAVGCLQQWKLTNGVH--QTPHMQREIELTDDFSGITPWISFIHYNKDQNVYIALSGTALFFI----DAIRFEQTAFVENRHAYPLTVCYAYVPSKYLVTGAKNGDIKVWNMSMYSLPYVGCFNGHLKKIVCIVAHPNEPLLITASDDSTIRFWRIETFQETYRFDVLDTIHDLRLVGPRKLYYTSQKYICLLDFNYFHSIFTLVGAKCLSLSRYAPGPDQPARIMIVGDDGGVRIISPTHGNILTMLFPV-VTHRPVSYTHDPMEHRLYVRLHDGDVMVVSSKSNPCRTVKIWKARCDDEQVVSMCVLF--LDVGADKKSILLGAHLDGCISLLKARG---LE-------MKKVSPARGIITQFQSNTVQHSYA-DFLTYNTENTITLWKVRTIGPGLIDLNMIDDIQIEGVPTHISFRGDFFALSHEN--RLVTYHVDFKKRGFCAGHVTLFKHTKDEQHTKSITQLTSCSNLAIFATSSLDGHIKIWDTQCHLLRELVFDSTL--SGVCFANGHGDLLVGFQSNLHYVPVLEYLPYGYLQTLLETEVPDDRTE 559
            ++I  + YD +   ++ G +G +  W +  G    Q  HM   + +  D       +  I  N      +AL  T +  +         E   F        +T C+      +L  G + G+I+VW++       +  F  H   ++CI + P    L+TA  DS I+ W + +     R ++ + ++ L+ +     +  +     L     F+S+F + G+    L R   G +   RI+   +DG +R +SP  G++L + +P  +  + V + +DP +  L+V     +V+V  +   PC   K       + Q    C+ +   ++G   + ++   H  G I +L       LE       +  +S   G I   Q N++  SY  D   + +E  +   KV+ + P    L+      +  +P  +       A++  N  RL  +H DF   G   G    F  T    H  +IT    C +L++F T S DG ++IWD    L+   + DS+L    VCFAN  GDLLV F  +L+ V  L+ LP   L  L    + D+  E
Sbjct:  111 FNISCLCYDPEMKMLLSGILGAVVTWVIELGGTGLQIAHM---VSMPGD-----ELVQDIVLNGPSGSLLALCETVVRVLMHQGKGQLGEVKRFTSTSSGSSITCCFTCFDQGFLYAGNQAGEIQVWSLQQGH--PLHSFQAHQSGVICIRSRPEAHTLLTAGSDSLIKEWNLTSGSLLRRLELGEELYRLQFIDSITFFCQTAHSFSLHRLPCFYSLFNVCGSAPQQLRRVCCG-NNWFRILCTTEDGLLRFVSPVTGDLLVITWPFSILDQAVDWAYDPGKEELFVATGSSEVLVFDTTRCPC-PAKYLLGTSPNSQDFVQCLAYGHFNLGRGLEGLIFSGHQSGVIRVLSQHSCARLEKFMHFGAVLALSTLSGGIFGGQGNSLLCSYGMDDYVHLSEAVLDGVKVQ-LRPLASILSSCHLTHLILLPKSVG------AITETNCLRLWKFH-DFLSSGSQNG--LKFIETLP-LHLCAITSFDVCLSLSLFVTGSADGSVRIWDFHGRLIG--ILDSSLHFGPVCFANDRGDLLVTFNQSLYLVSCLKLLPPALLTRLSFMSISDEVLE 658
The following BLAST results are available for this feature:
BLAST of TCONS_00049871-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR871.079e-3324.26WD repeat-containing protein 87 OS=Homo sapiens GN... [more]
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