TCONS_00049976-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049976-protein
Unique NameTCONS_00049976-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length145

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049976-protein ID=TCONS_00049976-protein|Name=TCONS_00049976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MASMDIKLKKVNKVYREGEKIAGTVIVIGRGEVVHSGISLSLEGTVNMQL
SAKSVGMFEAFYNSVKPITVLNTILELVKPGKLPSGTTEIPFEIPIRHLK
NKTLFESYHGVFINIQYLIKCDMKRSLLNKDLSKSTEFIIEDQVS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031668XLOC_031668Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049976TCONS_00049976Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028934Vps26-related
IPR014756Ig_E-set
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028934Vacuolar protein sorting protein 26 relatedPFAMPF03643Vps26coord: 9..142
e-value: 5.0E-25
score: 87.9
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 12..140

Blast
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BLAST of TCONS_00049976-protein vs. Swiss-Prot (Human)
Match: DSCR3 (Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.935e-64
Identity = 89/140 (63.57%), Postives = 117/140 (83.57%), Query Frame = 0 
Query:    2 ASMDIKLKKVNKVYREGEKIAGTVIVIGRGEVVHSGISLSLEGTVNMQLSAKSVGMFEAFYNSVKPITVLNTILELVKPGKLPSGTTEIPFEIPIRHLK-NKTLFESYHGVFINIQYLIKCDMKRSLLNKDLSKSTEFII 140
             ++DIK+K+ NKVY  GE ++G V++  +  V H G+SL++EGTVN+QLSAKSVG+FEAFYNSVKPI ++N+ +E+VKPGK PSG TEIPFE P+ HLK NK L+E+YHGVF+NIQY ++CDMKRSLL KDL+K+ EFI+
Sbjct:    3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPL-HLKGNKVLYETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIV 141
The following BLAST results are available for this feature:
BLAST of TCONS_00049976-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DSCR36.935e-6463.57Down syndrome critical region protein 3 OS=Homo sa... [more]
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