TCONS_00049986-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049986-protein
Unique NameTCONS_00049986-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049986-protein ID=TCONS_00049986-protein|Name=TCONS_00049986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp
MLDSEMEKLDQQNDRHSNYNQHRDRYDNDDQHQPGHYRGGYRGGYRGRGG
YRGGYRGGYNQADTNYHVHPNPPADWQPNGEFFLPEMDPRNCKFYIKTGA
CRFGQRCSRVHLKYDKSPTVMIQNFFQDARLSMPVLNEQNNDTGLEYDEV
DMIHDFEKFYDDVIQEFKSAGEVVMFKCCQNYVAHLRGNVYVQYKTAEEA
KEAIKLFNGRYYAGRMLTVEQSPITNWRSSICGLFDKRLCPRGSACNFLH
VFRNPKNAYSVPNRTDFDPERAFRSGGYDPRFVNPKHPVFQYYSQRDAYG
YRSSDVSKGKSADYGYGRNTWDSLNSKKSRSRSRDRRRRRSRSRGRSRSR
SRSSRSYSRSRSRSRSKSRHRHRRSRSRSRSRSRSRSRKRRDSRSSSRSS
HRKRSRNDSEVSDTSTDWSDLSDDPIK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031671XLOC_031671Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049986TCONS_00049986Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009145U2AF_small
IPR000571Znf_CCCH
IPR003954RRM_dom_euk
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0046872metal ion binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0089701 U2AF
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009145U2 auxiliary factor small subunitPRINTSPR01848U2AUXFACTORcoord: 208..232
score: 44.36
coord: 243..255
score: 53.85
coord: 92..111
score: 70.0
coord: 111..131
score: 27.92
coord: 181..203
score: 49.21
coord: 153..168
score: 37.5
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 226..252
e-value: 0.3
score: 20.2
coord: 88..113
e-value: 0.9
score: 16.6
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 228..251
e-value: 2.0E-4
score: 21.1
coord: 89..112
e-value: 1.2E-5
score: 25.0
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 226..253
score: 11.432
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 86..114
score: 11.15
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 150..220
e-value: 5.6E-8
score: 42.5
NoneNo IPR availableGENE3D4.10.1000.10coord: 208..258
e-value: 0.05
score: 12.9
coord: 10..118
e-value: 2.0E-5
score: 23.8
NoneNo IPR availableGENE3D3.30.70.330coord: 119..207
e-value: 1.6E-14
score: 53.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..427
NoneNo IPR availableCDDcd12540RRM_U2AFBPLcoord: 119..223
e-value: 1.47911E-47
score: 158.95
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 161..224
score: 9.388
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 156..224

Blast
[Close]
BLAST of TCONS_00049986-protein vs. Swiss-Prot (Human)
Match: U2AFM (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 8.497e-60
Identity = 100/209 (47.85%), Postives = 128/209 (61.24%), Query Frame = 0 
Query:   70 PNPPADWQPNGEFFLPEMDPRNCKFYIKTGACRFGQRCSRVHLKYDKSPTVMIQNFFQDARLSMPVLNEQNNDTGLEYDEVDMIHDFEKFYDDVIQEFKSAGEVVMFKCCQNYVAHLRGNVYVQYKTAEEAKEAIKLFNGRYYAGRMLTVEQSPITNWRSSICGLFDKRLCPRGSACNFLHVFRNPKNAYSVPNRTDF-DPERAFRSGG 277
            P PP D      F + E D  NC FY KTGACRFG RCSR H     SPT++I++ F    +     ++ + D  LEY E +    F  FY+DV+ EFK+ G+V+ FK   N   HLRGNVYVQY++ EE + A+ LFNGR+YAGR L  E  P+T W+ +ICGLF+ + CPRG  CNFLHVFRNP N +   NR  +  P+R   S G
Sbjct:  156 PEPPVD------FRVMEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDRTGSSFG 358
The following BLAST results are available for this feature:
BLAST of TCONS_00049986-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
U2AFM8.497e-6047.85U2 small nuclear ribonucleoprotein auxiliary facto... [more]
back to top