TCONS_00050015-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050015-protein
Unique Name	TCONS_00050015-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	379

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050015-protein ID=TCONS_00050015-protein|Name=TCONS_00050015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp
MYKLDLPIDLRESAAIERRRIKEQQRQSRIFNARVRTIGVDLQSLEQQVG
ERKWMEDQERRRHEAFANDMAMNDRICVLLQKRQDQDVKALEKSTNEFRK
EHQRPEDRREFDIYDPDGKKKDTPARVSDDDPRCGISSLQKFLGEDLNEK
ARKKLQQEQNREWFTSQMNERAQEDANRGQADRLHELKSIEMDQRAMDLA
RAEDECRDAVNMATKEYNLALARERKSKENADHQKELEDNLTEISNHVNG
DMLTENPAVAQSAFGSHRVISDRWKGMSPTQVNDVLQTQHQQVEENMRKR
DEANKQEEEWNENMLRNARAAVMMERQQERTRKELLRQQALENQRLAGEQ
KAKLDDINKNVYTNQPTAAYFMQFNTSSR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031683	XLOC_031683	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050015	TCONS_00050015	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008805	RIB43A

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 286..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..132
IPR008805	RIB43A	PFAM	PF05914	RIB43A	coord: 5..379 e-value: 1.6E-143 score: 477.9

Blast

[Close]

BLAST of TCONS_00050015-protein vs. Swiss-Prot (Human)
Match: RIBC2 (RIB43A-like with coiled-coils protein 2 OS=Homo sapiens GN=RIBC2 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.612e-75
Identity = 133/310 (42.90%), Postives = 194/310 (62.58%), Query Frame = 0

Query:   70 MAMNDRICVLLQKRQDQDVKALEKSTNEFRKEHQRPEDRREFDIYDPDGKKKDTPARVSDDDPRCGISSLQKFLGEDLNEKARKKLQQEQNREWFTSQMNERAQEDANRGQADRLHELKSIEMDQRAMDLARAEDECRDAVNMATKEYNLALARERKSKENADHQKELEDNLTEISNHVNGDMLTENPAVAQSAFGSHRVISDRWKGMSPTQVNDVLQTQHQQVEENMRKRDEANKQEEEWNENMLRNARAAVMMERQQERTRKELLRQQALENQRLAGEQKAKLDDINKNVYTNQPTAAYFMQFNTSSR 379
            M  ND+I  +L+ R+ +D K L ++ N+F++  Q+PE RREFD+ DP   KKD PAR SD+D R  IS +QKF+GEDLN   RKK Q+EQNREW   Q  E     A +  A+ L+    ++ D+ A  L + E   R AV  + K++N + A E   ++  + ++E EDNL EI+N + GD+L+ENP  A S+FG HRV+ DRWKGM+  Q+  +   Q QQ++E +R ++E  +++ +W+   ++ ARA ++ ERQQ R +++L R     N  LA EQ  +   +N+ VYTNQPT  YF QFNT SR
Sbjct:    1 MRQNDKIMCILENRKKRDRKNLCRAINDFQQSFQKPETRREFDLSDPLALKKDLPARQSDNDVRNTISGMQKFMGEDLNFHERKKFQEEQNREWSLQQQREWKNARAEQKCAEALYTETRLQFDETAKHLQKLESTTRKAVCASVKDFNKSQAIESVERKKQEKKQEQEDNLAEITNLLRGDLLSENPQQAASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQIQEKLRLQEEKRQRDLDWDRRRIQGARATLLFERQQWRRQRDLRRALDSSNLSLAKEQHLQKKYMNE-VYTNQPTGDYFTQFNTGSR 309

The following BLAST results are available for this feature:

BLAST of TCONS_00050015-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050015-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RIBC2	1.612e-75	42.90	RIB43A-like with coiled-coils protein 2 OS=Homo sa...	[more]

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TCONS_00050015-protein (polypeptide) - C. hemisphaerica