TCONS_00050024-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050024-protein
Unique NameTCONS_00050024-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length221

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050024-protein ID=TCONS_00050024-protein|Name=TCONS_00050024-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
IKMTRDLMPQFIRLHEQSYQQSSEDEERDFLMEVDEPFVDHHLPDDVEDF
LLMITELHQRVEQIHVLLADLKKHQGEIISEIHMNKRLHEEHDILVSEIK
KESSSVNEQIKRLKVVVEGEKRDGYITTEGKMKRDQVNVLVLIFQEVMEE
FNRTQIEHRDHCKSRIKRQFEICGHDVDGEDIEEMLENNEVNVFTKHLGI
DDLAKTQNALREVENRHADIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031690XLOC_031690Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050024TCONS_00050024Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006011Syntaxin_N
IPR010989SNARE
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 203..221
NoneNo IPR availableGENE3D1.20.58.70coord: 44..221
e-value: 4.5E-22
score: 78.3
IPR006011Syntaxin, N-terminal domainSMARTSM00503SynN_4coord: 42..163
e-value: 0.0011
score: 28.3
IPR006011Syntaxin, N-terminal domainPFAMPF00804Syntaxincoord: 48..220
e-value: 3.8E-31
score: 108.2
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 46..220

Blast
[Close]
BLAST of TCONS_00050024-protein vs. Swiss-Prot (Human)
Match: STX1B (Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.007e-21
Identity = 68/215 (31.63%), Postives = 117/215 (54.42%), Query Frame = 0 
Query:   13 RLHEQSYQQSSEDEE------RDFLMEVDEPFVDHHLPDDVEDFLLMITELHQRVEQIHVLLADLKKHQGEIISEIHMNKRLHEEHDILVSEIKKESSSVNEQIKRLKVVVEGEKRDGYITTEGKMKRDQVNVLVLIFQEVMEEFNRTQIEHRDHCKSRIKRQFEICGHDVDGEDIEEMLENNEVNVFTKHLGIDDLAKTQNALREVENRHADIL 221
            R  E    + S+DEE      RD  M  DE F      + VE+    I +L + VEQ+       KK    I++  + +++  +E + L ++IKK ++ V  ++K ++  +E E+     + + ++++ Q + L   F EVM E+N TQ ++RD CK RI+RQ EI G     E++E+MLE+ ++ +FT  + +D    T+ AL E+E RH +I+
Sbjct:    4 RTQELRSAKDSDDEEEVVHVDRDHFM--DEFF------EQVEEIRGCIEKLSEDVEQV-------KKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRSKLKAIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLAIFTDDIKMDS-QMTKQALNEIETRHNEII 202
The following BLAST results are available for this feature:
BLAST of TCONS_00050024-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX1B1.007e-2131.63Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1[more]
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