TCONS_00050025-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050025-protein
Unique Name	TCONS_00050025-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	666

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050025-protein ID=TCONS_00050025-protein|Name=TCONS_00050025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=666bp
SKVMLSGKILLYLVAVDTLSSVDGLTSRIPMKKLLNSGHNIVNTERFYLV
AFVPIRMKRFNRSGFVWREVLKYAYYEMIETFEKEGLYLNLDLLILDSEN
RLDITTSHIMDVLSKQMRDFHSPCCSAGAFNDHIIGFIGPASSSTSNHVL
NLLAFDHYPVISYSATSVRFHDKKEYPNFMRTLPSDDVQVKLILDILLRY
NWTYVAVIAQDDEYGRTGMDELKRLFSEHRICTAVERTIAIHNKTLMVKE
TKEVLKLIQNDLLANVVILWMDGVKLPTFFETAEKIKFYNKTFILSESAN
ETPSILSYDSNIIRGLLSIVPKSGQYNAFEDYFRRMMYRKDAKDDCLLRS
FFEESVGIDPTSDASINDYWGDLPMTKNGFVYDSLHAYGQAVKTFVNKHN
GTCNHTHTNVCLRSITSNRSDFIQNYLKKVAFINLHNEKVSFDSKGNVNC
TQFWISTIQPSTKHEGSLFWKRIGNWSNDQGLEMNFENFTWNNGLTIPPS
SKCGARCEPGYEHSNGSTECCWTCIPCQGNTIKQNVGHGLCMTCQPGSYT
NKQHTKCVIYLEKRFDFKSSMGIILLSFSITNLIVIISFTIVFIVYRKTP
VVLSSQLSISLAXILFDHQFDCHHIFHHRFYRLPENPRRFILATINQSSS
VFLFGTLESNSTVKYQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031691	XLOC_031691	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050025	TCONS_00050025	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR001828	ANF_lig-bd_rcpt
IPR011500	GPCR_3_9-Cys_dom
IPR028082	Peripla_BP_I

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 189..205 score: 38.05 coord: 205..222 score: 33.33 coord: 137..163 score: 39.7 coord: 170..189 score: 42.5
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 90..459 e-value: 1.7E-46 score: 158.9
IPR011500	GPCR, family 3, nine cysteines domain	PFAM	PF07562	NCD3G	coord: 499..549 e-value: 1.6E-7 score: 31.1
None	No IPR available	GENE3D	3.40.50.2300		coord: 89..449 e-value: 1.4E-41 score: 142.2
None	No IPR available	CDD	cd06350	PBP1_GPCR_family_C_like	coord: 97..335 e-value: 7.23203E-45 score: 162.54
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 78..491

Blast

[Close]

BLAST of TCONS_00050025-protein vs. Swiss-Prot (Human)
Match: GRM1 (Metabotropic glutamate receptor 1 OS=Homo sapiens GN=GRM1 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 5.745e-41
Identity = 131/497 (26.36%), Postives = 231/497 (46.48%), Query Frame = 0

Query:  128 GAFNDHIIGFIGPASSSTSNHVLNLLAFDHYPVISYSATSVRFHDKKEYPNFMRTLPSDDVQVKLILDILLRYNWTYVAVIAQDDEYGRTGMDELKRLFSEHRICTAVERTIAIHNKTLMVKETKEVLKLIQNDLLANVVILWMDGVKLPTFFETAEKIKFYNK-TFILSESANETPSILSYDSNIIRGLLSIVPKSGQYNAFEDYFRRMMYRKDAKD-----------DCLLRSFFEESVGIDP--TSDASIND-YWGDLPMTKNGFVYDSLHAYGQAVKTFVNKHNGTCNHTHTNVC--LRSITSNRSDFIQNYLKKVAFINLHNEKVSFDSKGNVNCTQFWISTIQPSTKHEGSLFWKRIGNWSNDQGLEMNFENFTWNNGLTIPPSSKCGARCEPGYEH--SNGSTECCWTCIPCQGNTIKQNVGHGLCMTCQPGSYTNKQHTKCVIYLEKRFDFKSSMGIILLSFSITNLIVIISFTIVFIVYRKTPVVLSS 605
            G     I G IGP SSS +  V NLL     P I+YSATS+   DK  Y  F+R +PSD +Q + +LDI+ RYNWTYV+ +  +  YG +GMD  K L ++  +C A   +  I++        + + KL +    A VV+ + +G+ +        ++    + + I S+   +   ++        G ++I  +S +  +F+DYF ++    + ++            C L     E+       T + S+ + Y  D   +K GFV ++++A    ++   N H+  C   H  +C  ++ I  ++   + ++L K +FI +  E+V FD KG+    ++ I  +Q +  +     +  +G W   +G+ +N +++      +    S C   C  G       G   CCW C  C+ N   Q+     C  C  G + N   T C     +  ++ +   II ++FS   ++V +  T++F++YR TPVV SS
Sbjct:  150 GRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIA--HSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQD---SKMGFVINAIYAMAHGLQ---NMHHALC-PGHVGLCDAMKPIDGSK---LLDFLIKSSFIGVSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYD--YVHVGTW--HEGV-LNIDDYKIQMNKSGVVRSVCSEPCLKGQIKVIRKGEVSCCWICTACKENEYVQD--EFTCKACDLGWWPNADLTGCEPIPVRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLYRDTPVVKSS 626

The following BLAST results are available for this feature:

BLAST of TCONS_00050025-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050025-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM1	5.745e-41	26.36	Metabotropic glutamate receptor 1 OS=Homo sapiens ...	[more]

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TCONS_00050025-protein (polypeptide) - C. hemisphaerica