TCONS_00050028-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050028-protein
Unique Name	TCONS_00050028-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	653

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050028-protein ID=TCONS_00050028-protein|Name=TCONS_00050028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=653bp
MASNIGGTGTSGGGSFGILGGEVLPPKGNENKLITSSTANRADDLGEDDV
FANENESPRSAHSHSAHISTKPSKVSTVSVVGVSQISSSTSSPASIPYPI
QDSVLPVTSVNHAAAAGTSIAVTVPTTTRRPSYTSKAPSALTNLPKIDDI
TTSPSNIQTFTLNPTAIIEKRSSLSGFDNDDNGRPGHKDLLSLHGQASFD
SIDHEEYSNPGTPTSSSLSSGHLLAARNKDKANRMRADLLSKGKWEMAAK
ANILTVRCREEVAELHKDKFGSGSKGKCIKFGDKWCTPIEFEGLAGRASC
KDWKRSIRFHGLHLQKLIEDQFLTLHAISCTCGICCGDETLTGPVKLFQS
VKRKRSHIGSTLGSSPGPYKRKSFSDEYKQAFRERGASFSVEGDVFTLGH
DDPGMPPMTPLTPITPLTPHTPFGANCLTPLPVGVVRPTSPPKSIMLQVP
VSSTSAGSTIAIPLKEMIHQQTIQHHQLAPMIPPPTPPKPDINTLNQLTA
QPWNQLEEMASALVIMANKFKLIIEQTKIQAEALKDSAVTQAKIQAENEK
AEIRRAHFQHGAVQLISLPNGDPTTQITVHQQLPKCNNCGRDASQTCRGC
NKSHYCGTFCQQKDWILHRNRCGRIEHAMVPDEHATQVVTSQNATHLTIP
GDK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031693	XLOC_031693	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050028	TCONS_00050028	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013289	CBFA2T1/2/3
IPR000770	SAND_dom
IPR002893	Znf_MYND
IPR010919	SAND_dom-like

Vocabulary: **Biological Process**
Term	Definition
GO:0045892	negative regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003714	transcription corepressor activity
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003714	transcription corepressor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013289	CBFA2T family	PRINTS	PR01875	ETOFAMILY	coord: 526..554 score: 30.3 coord: 597..625 score: 52.71
IPR000770	SAND domain	SMART	SM00258	SAND_2	coord: 252..324 e-value: 1.4E-25 score: 100.9
IPR000770	SAND domain	PFAM	PF01342	SAND	coord: 250..323 e-value: 5.4E-24 score: 83.6
IPR000770	SAND domain	PROSITE	PS50864	SAND	coord: 244..324 score: 18.734
None	No IPR available	GENE3D	3.10.390.10		coord: 246..340 e-value: 6.1E-23 score: 80.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..221
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 580..627
IPR002893	Zinc finger, MYND-type	PFAM	PF01753	zf-MYND	coord: 586..622 e-value: 2.3E-7 score: 30.7
IPR002893	Zinc finger, MYND-type	PROSITE	PS01360	ZF_MYND_1	coord: 586..622
IPR002893	Zinc finger, MYND-type	PROSITE	PS50865	ZF_MYND_2	coord: 586..622 score: 11.879
IPR010919	SAND domain-like	SUPERFAMILY	63763	SAND domain-like	coord: 248..336

Blast

[Close]

BLAST of TCONS_00050028-protein vs. Swiss-Prot (Human)
Match: DEAF1 (Deformed epidermal autoregulatory factor 1 homolog OS=Homo sapiens GN=DEAF1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.206e-44
Identity = 130/419 (31.03%), Postives = 181/419 (43.20%), Query Frame = 0

Query:  241 SKGKWEMAAKANILTVRCREEVAELHKDKFGSGSKGKCIKFGDKWCTPIEFEGLAGRASCKDWKRSIRFHGLHLQKLIEDQFLTLHAISCTCGICCGDETLTGPVKLFQSVKRKRSH-------------------------------IGSTLGSSPGPYKRKSFSDEYKQAFRERGASFSVEGDVFTLG--HDDPGMPPMTPLTPITPLTPHTP-FGANC-LTPLPVGVVRPTSPPKSIMLQVPVSSTSAGSTIAIPLKEMIHQQTIQHHQLAPMIPPPTPPKPDINTLNQLTAQPWNQLEEMASALVIMANKFKLIIEQTKIQAEALKDSAVTQAKIQAENEKAEIRRAHFQHGAVQLISLPNGDPTTQITVHQQLPKCNNCGRDASQTCRGCNKSHYCGTFCQQKDWILHRNRCGR 624
            +K  W+ +   + L VRCR     L+K++ GSG +G+CIK G+ W +P EFE +AGRAS KDWKRSIR+ G  LQ LI+D  L  HA SCTC  CC D TL+GPV+LF   KR++                                  G    S    + R S + E      E  A    +GDVF      +    PP     P     PH P +  +C + P P   + PTS PK ++  +P  +    +        ++                        N L     + W  LEEM ++L+  A + K + EQ K  A   +++A  QAKI A+ E+ E                                 C NCGR+A   C GC+K +YC TFCQ+KDW  H++ CG+
Sbjct:  190 TKYNWDPSVYDSELPVRCRNISGTLYKNRLGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAASCTCAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSPKNITLLPATAATTFTVTPSGQITTSGALTFDRAS-TVEATAVISESPA----QGDVFAGATVQEASVQPPCRASHP----EPHYPGYQDSCQIAPFPEAAL-PTSHPKIVLTSLPALAVPPPTPTKAAPPALV------------------------NGLELSEPRSWLYLEEMVNSLLNTAQQLKTLFEQAK-HASTYREAATNQAKIHADAERKE-------------------------------QSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQ 542

The following BLAST results are available for this feature:

BLAST of TCONS_00050028-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050028-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DEAF1	8.206e-44	31.03	Deformed epidermal autoregulatory factor 1 homolog...	[more]

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TCONS_00050028-protein (polypeptide) - C. hemisphaerica