TCONS_00050093-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050093-protein
Unique Name	TCONS_00050093-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	493

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050093-protein ID=TCONS_00050093-protein|Name=TCONS_00050093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp
MEYTPSAGTQQQILCCQCGTPTPPNPANICIGCIRSQVDITEGIQKQAYL
QFCKGCERYFQPPNMWVVCQLESRELLALCLKKLKGLNKAHLIDAGFVWT
EPHSKRIKVKLTVQKEVLGSTILQQTFIVEFQVQGQMCDDCHRREAKDFW
KAVVQVRQKVPHKKTFYYLEQLIIKHGIASSCLNIKQVHEGLDFYYANKQ
HAKRMVDFLSTQVPLRTKQSERLISSDIRNNTANFKHTFSVELAPICKND
IVCLPLKVARSLGNMSQIAICSKIATTIHLVDPFTGKVGELSGVAYWRAP
FLPFTGAKQLAEFTVIDVEINRQTMKSKYCQADVYLMKNNVDVGSDMQVH
CRTHLGHLLKAGDIVNGVDFTTANLNDDNLAEMKPENIPDVALVKKSFAE
RTRRRAKRVWRLKELPKETEEKNPSDDYDDFLEDLEEDKDYRSAINIYKD
PSKFATDSASESGDVPRIGLEEMLDDLKIEDAEMFTKKIINHL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031714	XLOC_031714	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050093	TCONS_00050093	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007064	NMD3

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007064	NMD3	PFAM	PF04981	NMD3	coord: 15..243 e-value: 3.2E-78 score: 262.4

Blast

[Close]

BLAST of TCONS_00050093-protein vs. Swiss-Prot (Human)
Match: NMD3 (60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1)

HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 268/506 (52.96%), Postives = 357/506 (70.55%), Query Frame = 0

Query:    1 MEYTPSAGTQQ--QILCCQCGTPTPPNPANICIGCIRSQVDITEGIQKQAYLQFCKGCERYFQPPNMWVVCQLESRELLALCLKKLKG-LNKAHLIDAGFVWTEPHSKRIKVKLTVQKEVLGSTILQQTFIVEFQVQGQMCDDCHRREAKDFWKAVVQVRQKVPHKKTFYYLEQLIIKHGIASSCLNIKQVHEGLDFYYANKQHAKRMVDFLSTQVPLRTKQSERLISSDIRNNTANFKHTFSVELAPICKNDIVCLPLKVARSLGNMSQIAICSKIATTIHLVDPFTGKVGELSGVAYWRAPFLPFTGAKQLAEFTVIDVEINRQTMKS--------KYCQADVYLMKNNVDVGSDMQVHCRTHLGHLLKAGDIVNGVDFTTANLNDDNLAEMKPENIPDVALVKKSFAERTRRRAKRVWRLKELPKETEEKNPSDD--YDDFLEDLEEDKDYRSAINIYKDPSKFATDSASESGDVPRIGLEEMLDDLKI-------EDAEMFT 486
            MEY   +  +    ILCC+CG P  PNPANIC+ C+RS+VDI++GI KQ  + FCK C+RYFQPP  W+ C LESRELLALCLKK+K  L+K  L+DAGFVWTEPHSKR+KVKLT+QKEV+   ILQQ F+V++ VQ QMC DCHR EAKDFWKAV+QVRQK  HKKTFYYLEQLI+K+G+  + L IK++H+GLDFYY++KQHA++MV+FL   VP R K S+RLIS DI +NT N+K TFSVE+ PICK+++VCL  K+A+SLGNM+QI +C ++ + IHL+DP T +V ++ G  +W  PF      KQL EF V++  I +   ++        K+   +V++ K + ++ +D Q  CRTHLGHLL  GD+V G D    NLND+++ +M  + +PDV L+KKS+ +RT+R+ +R W+LKEL +E E  +  D+  Y DFLEDLEED+  R  +NIY+D S    +S ++    PRI L EML+DL I       E A M T
Sbjct:    1 MEYMAESTDRSPGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTS-EMNTDKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSY-DRTKRQRRRNWKLKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYRD-SAIPVESDTDDEGAPRISLAEMLEDLHISQDATGEEGASMLT 503

The following BLAST results are available for this feature:

BLAST of TCONS_00050093-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050093-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NMD3	0.000e+0	52.96	60S ribosomal export protein NMD3 OS=Homo sapiens ...	[more]

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TCONS_00050093-protein (polypeptide) - C. hemisphaerica