TCONS_00050100-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050100-protein
Unique NameTCONS_00050100-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050100-protein ID=TCONS_00050100-protein|Name=TCONS_00050100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MAICSLFLAGLLISFIHGDVTIKETETLGYNLKDSSSSNSRCSVCRHGRD
GLNGRDGVNGRDGVNGIDGCDGMPGKQGVQGPPGKDGLQGSTGKDGKDLL
ASQWKDCVWNHINDDKDKGLVRECSFKKKYATTYLRISVSSNGRVYGCSG
CCKRWFVTIDNKECAPAPIDFSHYRADAKTDDDVGQFLLKGNCRIPKTGS
VKIGFHIGNCHGLGDADGYTGHKQVTRIMIEEIAPPQA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031718XLOC_031718Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050100TCONS_00050100Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.160.20.50coord: 36..102
e-value: 8.5E-6
score: 25.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..92
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 48..97
e-value: 8.8E-10
score: 38.1

Blast
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BLAST of TCONS_00050100-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.585e-24
Identity = 60/192 (31.25%), Postives = 91/192 (47.40%), Query Frame = 0 
Query:   52 LNGRDGVNGRDGVNGIDGCDGMPGKQGVQGPPGKDGLQGSTGKDGKDLLASQW----KDCVWNHINDDKDKGLVRECSFKKKYATTYLRISVSSNGRVYGCSGCCKRWFVTIDNKECA-PAPIDFSHYRADAKTDDDVGQFL-----LKGNCRIPKTGSVKIGFHIGNCHGLGDADGYTGHKQVTRIMIEEI 233
            L G  GV GRDG  G +G  G PG       PG+DG +G  G+  ++     W    K C W+ +N   D G + EC+F K  + + LR+  S + R+   + CC+RW+ T +  EC+ P PI+   Y      + +    +     ++G C     G V +   +G C      D  TG   V+RI+IEE+
Sbjct:   56 LQGPAGVPGRDGSPGANGIPGTPGI------PGRDGFKGEKGECLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEEL 241
The following BLAST results are available for this feature:
BLAST of TCONS_00050100-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR13.585e-2431.25Collagen triple helix repeat-containing protein 1 ... [more]
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