TCONS_00050107-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050107-protein
Unique Name	TCONS_00050107-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	246

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050107-protein ID=TCONS_00050107-protein|Name=TCONS_00050107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MWSFMLVVCGVFFSTVSGGQIYPSNEVQSVALNSDFHKKWTIQPTPNEEA
KSIILYYHSGEKDPKVVWHGSVTKLGKTTFNGTLIVNIIENTEVVVKFSN
IQEAMVLYLMVHFVDDKSGEMHAFYSNTKIVLKVNGEWANWGSWNACSLT
CGVGKQTRRRRCTDPSSTNGGNDCRGLKIETKNCFIRRCTPVHGKWTQWG
KWAQCNTCGGSLDKIRYRSCTNPAPAHNGYVCTGQKSETRHCGLSC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031723	XLOC_031723	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050107	TCONS_00050107	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01705	TSP1REPEAT	coord: 231..242 score: 37.13 coord: 154..165 score: 43.68 coord: 136..149 score: 42.22
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 138..190 e-value: 3.8E-12 score: 56.3 coord: 196..246 e-value: 0.062 score: 20.0
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 198..242 e-value: 4.6E-6 score: 26.7 coord: 140..189 e-value: 2.0E-10 score: 40.6
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 192..246 e-value: 1.4E-9 score: 37.6 coord: 134..189 e-value: 4.8E-15 score: 55.1
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 135..190 score: 12.543
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 193..243 score: 9.916
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 192..242
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 133..189

Blast

[Close]

BLAST of TCONS_00050107-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.490e-24
Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 0

Query:  121 MHAFYSNTKIVLKVNGEWANWGSWNACSLTCGVGKQTRRRRCTDPSSTNGGNDCRGLKIETKNCFIRRCTPVHGKWTQWGKWAQCNTCGGSLDKIRYRSCTNPAPAHNGYVCTGQKSETRHCGL 244
            M +      ++++V+G ++ W +W ACS+TCG G Q R R C  P   NGG  C+G  +E +NC  + C PV G W++W  W +C    G  ++ R R+C NP+  H G  C G   E   C +
Sbjct: 4515 MGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPC-PVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNI 4637

HSP 2 Score: 100.138 bits (248), Expect = 7.181e-24
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 0

Query:  134 VNGEWANWGSWNACSLTCGVGKQTRRRRCTDPSSTNGGNDCRGLKIETKNCFIRRCTPVHGKWTQWGKWAQCN-TCGGSLDKIRYRSCTNPAPAHNGYVCTGQKSETRHC 242
            ++G+WA W SW+ACS++CG G + R R C+DP    GG  C G  +++  C    C P HG W+ W  W  C+ TC G   + RYR+C NP P++ G  C G  S+ + C
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC-PTHGNWSPWSGWGTCSRTCNGGQMR-RYRTCDNPPPSNGGRACGGPDSQIQRC 4806

HSP 3 Score: 99.7525 bits (247), Expect = 7.676e-24
Identity = 45/109 (41.28%), Postives = 59/109 (54.13%), Query Frame = 0

Query:  134 VNGEWANWGSWNACSLTCGVGKQTRRRRCTDPSSTNGGNDCRGLKIETKNCFIRRCTPVHGKWTQWGKWAQCNTCGGSLDKIRYRSCTNPAPAHNGYVCTGQKSETRHC 242
            V+G W+ W  W  C+ +CG G QTR R C +PS  +GG  C G  +E   C IR C PVHG W+ W  W  C+   G   + R R C NP PA  G  C G +++ + C
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC-PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVC 4692

HSP 4 Score: 93.2041 bits (230), Expect = 1.359e-21
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 0

Query:  134 VNGEWANWGSWNACSLTCGVGKQTRRRRCTDPSSTNGGNDCRGLKIETKNCFIRRCTPVHGKWTQWGKWAQCN-TCGGSLDKIRYRSCTNPAPAHNGYVCTGQKSETRHC 242
            V+G W+ W  W  CS +CG G QTR R C +P    GG+ C G + + + C  R C P+HGKW  W  W+ C+ +CGG   + R R C++P P + G  C G   ++  C
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC-PIHGKWATWASWSACSVSCGGGARQ-RTRGCSDPVPQYGGRKCEGSDVQSDFC 4749

HSP 5 Score: 85.8853 bits (211), Expect = 5.013e-19
Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 0

Query:  135 NGEWANWGSWNACSLTCGVGKQTRRRRCTDPSSTNGGNDCRGLKIETKNCFIRRCTPVHGKWTQWGKWAQCNTCGGSLDKIRYRSCTNPAPAHNGYVCTGQKSETRHCGL 244
            +G W+ W  W  CS TC  G+  R R C +P  +NGG  C G   + + C    C PV G W  W  W+QC+   G  +K R R C +P P   G  C G  ++   C +
Sbjct: 4757 HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC-PVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNV 4865

The following BLAST results are available for this feature:

BLAST of TCONS_00050107-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050107-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	1.490e-24	36.29	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00050107-protein (polypeptide) - C. hemisphaerica