TCONS_00050109-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050109-protein
Unique Name	TCONS_00050109-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1019

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050109-protein ID=TCONS_00050109-protein|Name=TCONS_00050109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1019bp
MFDDDENDDYVTIGTPFEIPDDIENAPLKKQAKVSDQIVTDKQGRRRFHG
AFTGGFSAGYFNTVGSKEGWTPSTFKSSRKSKNQEIDEDEGSGQNQRFQQ
RPEDFMDDEDFSEHGIAPRRLKTTSDFTSTEEELNSRKRQITQHLNENEE
QPASDSLLDELLLPTKLSIGIQILKKMGWKQGQGVGEKDRAASVPEPVKG
KKVYGCMRPQATDSTDMSAFKKLLAPKDVVQISFTRKDNFHGIGYSGLDP
TTAMFGSGLESRSFKPTGKEKRGIKGHAFGVGAFEDEDKDIYGVDNMSNY
DISMTVEDESHKHGWSGAPKLKQNKGCLSGFEKGSRVLKAPSTQKMISIP
SGFIPKHTFPSNEKNSSITCTQNDGDKNNKARLTSKERGLMFGETVKTLD
DVNKWALKWDDRPAQEENDSEKDRDMETEKQEKSNRFSSRWDKEINQVRP
KIINKPSPADTAEETKPKKDVPMYDVKSKTFRPFAKNPEKQARYEEFVKA
KKENRDAVFQYDTSVTEWERQRERDEFTRASILYRPLNSMFANRFTPATS
ADPQNITLKSTMVEKPNDGSGGVPTKESNTFSSENDDRLSDDMKAAKMGM
YGKLTRSVHQWHPDQLLCKRFNIPEPYPGSKIRGVPDRARKSKAGSFFER
DFLSIAMSSSNENDNVEDIEEDDFASRIKNDEQKTLQKKTLKIGPLAHLN
RNLGEVDNESNGAESITESNQGTSSSVSITKSITSKPSIDIFKAIFDDSE
SSSSDESDSDETQKEIDKSPPKIDKPDEETRIVESNKTNQSQMNDSIGSA
YKPKTEGPLAFLNSTRLRNDTDGNISIRDESIENVNNVSSILTSIRKDAD
QSDNQNNKAERKSGRIDNKYNKIENQSTSYRRNETSNHDRKSDFNKRSHE
DEWTEKDTRRADKKRDKTDYDYSSSEENDDDQERHKSSKSSKKKHKHNKK
DKKHKKKSKKFKKKKYRGNRESDSSSDSEDNDNSIPSNTLLLEKLKEIRA
TTDKRKNLQWTGIHEKLTR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031725	XLOC_031725	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050109	TCONS_00050109	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000467	G_patch_dom
IPR011666	DUF1604

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 842..876
None	No IPR available	COILS	Coil	Coil	coord: 131..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 844..1019
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 412..471
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 702..729
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 564..588
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 351..384
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 747..807
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 168..201 e-value: 1.2E-6 score: 28.1
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 166..222 score: 11.553
IPR011666	G patch domain-containing protein, N-terminal	PFAM	PF07713	DUF1604	coord: 33..127 e-value: 2.7E-36 score: 123.1

Blast

[Close]

BLAST of TCONS_00050109-protein vs. Swiss-Prot (Human)
Match: GPTC1 (G patch domain-containing protein 1 OS=Homo sapiens GN=GPATCH1 PE=1 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 2.488e-115
Identity = 281/811 (34.65%), Postives = 408/811 (50.31%), Query Frame = 0

Query:    3 DDDENDDYVTIGTPFEIPDDIENAPLKKQAKVSDQIVTDKQGR-RRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRKSKNQEIDEDEGSGQNQRFQQRPEDFMDDEDFSEHGIAPRRLKTTSDFTS-TEEELNSRKRQITQHLNENEEQPASDSLLDELLLPTKLSIGIQILKKMGWKQGQGVGEK-DRAASVPEPVKGKKVYGCMRPQAT------DSTDMSAFKKLLAPKDVVQISFTRKDNFHGIGYSGLDPTTAMFGSGLESRSFKPTGKE--------------KRGIKGHAFGVGAFEDEDKDIYGVDNMSNYDISMTVEDESHK-HGWSGAPKLKQNK-----------GCLSGFEKGSRVLKAPSTQKMISIPSGFIPKHTF----PSNEKNSSITCTQN--------DGDKNNKARLTSKERGLMFGETVKTLDDVNKWALKWDDRPAQEENDSEKDRDMETEKQEKSNRFSSR-WDKEINQVRPKIINKPSPADTAEETKPKKDV--PMYDVKSKTFRPFAKNPEKQARYEEF-VKAKKENRDAVFQ-YDTSVTEWERQRERDEFTRASILYRPLNSMFANRFTPATSADPQNITLKSTMVEKPNDGSGGVPTKESNTFSSENDDRLSDDMKAAKMGMYGKLTRSVHQWHPDQLLCKRFNIPEPYPGSKIRGVPDRARKSKAGSFFERDFLSIAMSSS-----NENDNVEDIEEDDFASRIKNDEQKTLQKKTLKIGPLAHLNRNLGE---------VDNESNGAESITESNQGTSSSV-SITKSITSKPSIDIFKAIF 746
            D D  +D V+ GT  E  ++ E    KK   + DQ V D++GR +RFHGAF+GGFSAGYFNTVGSKEGWTPSTF SSR+++              +    PEDFMD+ED SE GIAP+ + TT DF S T++ +  + RQ+          P + +LLD+L+ P KLS+G ++L+KMGWK+GQGVG +  R     +P  G K+YGC  P  +      +  D        APKDV  + FT KDN HG+ Y GLDP  A+FG+  E  +    G E              K GI G AFGVGA E+ED DIY  + +S YD  +  E+     +GW+ AP+  +N+             L GF   S+ L +        +P  + P H F     +  +NS +    +        D   ++K +L + +R  + GET   +       L++       + D E+ ++M+     K+ +  +R   +     R ++    SPA  A        +      +K+  F+PFAK+PEKQ RY+EF V  K+  +DA+ +  D S+TEWER RERDEF RA++LY   +S  ++RFT A   D       S  VE P D               END  + D   A KM M+GKLTR   +WHPD+LLCKRFN+P+PYP S + G+P R ++ K   F   +FL++  ++S       ++ V      D + +    +    +KK   I     L R+  E         V+ E   A  ++ +NQ  +  V +  +   S+PS+D+F+AIF
Sbjct:    5 DSDSEEDLVSYGTGLEPLEEGERP--KKPIPLQDQTVRDEKGRYKRFHGAFSGGFSAGYFNTVGSKEGWTPSTFVSSRQNR------------ADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKTKDRIREKARQLAA---ATAPIPGA-TLLDDLITPAKLSVGFELLRKMGWKEGQGVGPRVKRRPRRQKPDPGVKIYGCALPPGSSEGSEGEDDDYLPDNVTFAPKDVTPVDFTPKDNVHGLAYKGLDPHQALFGTSGEHFNLFSGGSERAGDLGEIGLNKGRKLGISGQAFGVGALEEEDDDIYATETLSKYDTVLKDEEPGDGLYGWT-APRQYKNQKESEKDLRYVGKILDGFSLASKPLSSKKIYPPPELPRDYRPVHYFRPMVAATSENSHLLQVLSESAGKATPDPGTHSKHQLNASKRAELLGET--PIQGSATSVLEF-----LSQKDKERIKEMKQATDLKAAQLKARSLAQNAQSSRAQL----SPAAAAGHCSWNMALGGGTATLKASNFKPFAKDPEKQKRYDEFLVHMKQGQKDALERCLDPSMTEWERGRERDEFARAALLYASSHSTLSSRFTHAKEED------DSDQVEVPRD--------------QEND--VGDKQSAVKMKMFGKLTRDTFEWHPDKLLCKRFNVPDPYPDSTLVGLP-RVKRDKYSVF---NFLTLPETASLPTTQASSEKVSQHRGPDKSRKPSRWDTSKHEKKEDSISEFLSLARSKAEPPKQQSSPLVNKEEEHAPELS-ANQTVNKDVDAQAEGEGSRPSMDLFRAIF 758

The following BLAST results are available for this feature:

BLAST of TCONS_00050109-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050109-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GPTC1	2.488e-115	34.65	G patch domain-containing protein 1 OS=Homo sapien...	[more]

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TCONS_00050109-protein (polypeptide) - C. hemisphaerica