SOX3 (polypeptide) - C. hemisphaerica

Overview
NameSOX3
Unique NameTCONS_00050178-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050178-protein ID=TCONS_00050178-protein|Name=SOX3|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
MATTIGAIATHHTTTETINVNHIKPDTDFATHSMVTTTYDPNVHHAAIDI
SNSMHAFATELSVDPTKAGDDPDRIKRPMNSFMVWSREKRRKLAQENPKM
HNSEISKRLGAEWKVLTEEEKAPFVYEAKRLRAEHMKTHPDYKYRPRRKN
KNAPKKTEHKITMPTAVIGADGKQIFMPAQYAAAPGYAIASAGGMNYPVP
LNAAYMSALVNGEAAAYPAGTAMYGIPPGTAIAVAATTVAAQTTQTSTTA
ATAVVASTAPPTAVTAAQFSVFPPGAATYMYSPFSFPYGATIAGGAAAAY
SPQAAAAYPHTIAVKQEGAVSPEKTSGEVSRTTFATAASIAAHYPGIYSV
PIAIDQNSNPIGFDPKMHYATMAVAQERVAATGSHPGSPARSTPNSTTAS
EH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031783XLOC_031783Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050178TCONS_00050178Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 74..144
e-value: 2.4E-27
score: 106.9
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 68..165
e-value: 5.6E-32
score: 109.7
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 75..143
e-value: 2.0E-26
score: 92.1
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 75..143
score: 22.681
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 63..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 378..402
NoneNo IPR availableCDDcd01388SOX-TCF_HMG-boxcoord: 74..145
e-value: 1.23988E-38
score: 133.578

Blast
[Close]
BLAST of SOX3 vs. Swiss-Prot (Human)
Match: SOX2 (Transcription factor SOX-2 OS=Homo sapiens GN=SOX2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.013e-45
Identity = 72/106 (67.92%), Postives = 84/106 (79.25%), Query Frame = 0 
Query:   70 DDPDRIKRPMNSFMVWSREKRRKLAQENPKMHNSEISKRLGAEWKVLTEEEKAPFVYEAKRLRAEHMKTHPDYKYRPRRKNKNAPKKTEHKITMPTAVIGADGKQI 175
            + PDR+KRPMN+FMVWSR +RRK+AQENPKMHNSEISKRLGAEWK+L+E EK PF+ EAKRLRA HMK HPDYKYRPRRK K   KK   K T+P  ++   G  +
Sbjct:   36 NSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKD--KYTLPGGLLAPGGNSM 139
The following BLAST results are available for this feature:
BLAST of SOX3 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX21.013e-4567.92Transcription factor SOX-2 OS=Homo sapiens GN=SOX2... [more]
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