TCONS_00050222-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050222-protein
Unique NameTCONS_00050222-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050222-protein ID=TCONS_00050222-protein|Name=TCONS_00050222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
LARKVNKKKKKMTQAVKDVETLYKLMISQLRYDGLELVATSLAKCCNLDE
LPLAPCNRLLEVVKLGLAEEKSGREPDLMKHPGITPTSQPELQGLETSVK
MGLDLEYEKDEFGTSPPVTQYETNYVTAHKGPVTAAAFTKDGRLCATGSV
DTSIKILDISRMLAKAAQSKEERQAERDADDGNSMKNHPVIRTMYDHESC
VNTLQFHPQSTILVSGGEDRRVNFFDYTKSTVKKAFKCITEVEPIRDISI
HPTGEYILVATDHPTIRLYDINTSQCYISPMMDDQHQAPLTSVEYCPAAN
LYATASLDGSWKLWDGVSNRCVQTYKEAHDTAEVVSVRFTKNSKFVLTSG
RDGTAKLWELSTGRVINTYGGAVLHNSNHCPAVFNFTEDFVLYPDDKNTS
IGCWDSRTGEKLQSLTSGHNNSIRHLVHSSCTPAFLSCSEDYRCRFWYCR
GS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031818XLOC_031818Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050222TCONS_00050222Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR032028CSTF1_dimer
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 187..226
e-value: 2.4E-6
score: 37.1
coord: 235..270
e-value: 0.57
score: 18.5
coord: 408..448
e-value: 0.065
score: 22.4
coord: 114..158
e-value: 3.8E-5
score: 33.1
coord: 318..359
e-value: 1.4E-5
score: 34.5
coord: 274..315
e-value: 0.0059
score: 25.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 127..156
e-value: 0.0014
score: 19.3
coord: 192..226
e-value: 0.0019
score: 18.9
coord: 410..447
e-value: 0.019
score: 15.8
coord: 320..358
e-value: 4.0E-5
score: 24.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 194..235
score: 11.21
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 327..368
score: 12.714
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 283..324
score: 11.444
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 126..160
score: 10.241
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 301..452
e-value: 9.5E-24
score: 83.3
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 120..300
e-value: 8.0E-34
score: 116.4
IPR032028Cleavage stimulation factor subunit 1, dimerisation domainPFAMPF16699CSTF1_dimercoord: 15..70
e-value: 8.2E-17
score: 60.6
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 346..360
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 126..452
score: 34.434
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 190..447
coord: 104..163
NoneNo IPR availableCDDcd00200WD40coord: 122..447
e-value: 2.25968E-50
score: 173.29

Blast
[Close]
BLAST of TCONS_00050222-protein vs. Swiss-Prot (Human)
Match: CSTF1 (Cleavage stimulation factor subunit 1 OS=Homo sapiens GN=CSTF1 PE=1 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 4.862e-143
Identity = 211/444 (47.52%), Postives = 282/444 (63.51%), Query Frame = 0 
Query:   15 AVKDVETLYKLMISQLRYDGLELVATSLAKCCNLDELP----LAPCNRLLEVVKLGLAEEKSGREPDLMKHPGITPTSQPELQGLETSVKMGLDLEYEKDEFGTSPPVTQYETNYVTAHKGPVTAAAFTKDGRLCATGSVDTSIKILDISRMLAKAAQSKEERQAERDADDGNSMKNHPVIRTMYDHESCVNTLQFHPQSTILVSGGEDRRVNFFDYTKSTVKKAFKCITEVEPIRDISIHPTGEYILVATDHPTIRLYDINTSQCYISPMMDDQHQAPLTSVEYCPAANLYATASLDGSWKLWDGVSNRCVQTYKEAHDTAEVVSVRFTKNSKFVLTSGRDGTAKLWELSTGRVINTYGGAVL--HNSNHCPAVFNFTEDFVLYPDDKNTSIGCWDSRTGEKLQSLTSGHNNSIRHLVHSSCTPAFLSCSEDYRCRFWYCRGS 452
             +KD + LYKL+ISQL YDG   +A  L     ++E+      AP  +LL ++KLG+  + +  +  + +   + P +             G+DLE++ D    SP  ++YET YVT+HKGP   A +++DG+L ATGS D SIKILD  RMLAK+A   E    E    +   M+NHPVIRT+YDH   V  L FHP   IL SG  D  +  FDY+K + K+AFK I E E +R IS HP+G++ILV T HPT+RLYDINT QC++S    DQH   + SV Y  +AN+Y T S DG  KLWDGVSNRC+ T+++AHD AEV S  F+KNSK++L+SG+D  AKLWE+STGR +  Y GA L     +   AVFN TED+VL PD++  S+ CWDSRT E+   L+ GHNN +R +VHS   P F++CS+D+R RFWY R +
Sbjct:    7 GLKDRQQLYKLIISQLLYDGYISIANGL-----INEIKPQSVCAPSEQLLHLIKLGMENDDTAVQYAIGRSDTVAPGT-------------GIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQN---MENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRRST 429
The following BLAST results are available for this feature:
BLAST of TCONS_00050222-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSTF14.862e-14347.52Cleavage stimulation factor subunit 1 OS=Homo sapi... [more]
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