TCONS_00050226-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050226-protein
Unique NameTCONS_00050226-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050226-protein ID=TCONS_00050226-protein|Name=TCONS_00050226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
KYEIIMEEDNEELEWDFFNHLPEELILKVLSYLSPYTDTKTAKLVNRRWN
RLISSIERHNDRVFHEAIRTSNIMWQIHKLRSYDITDTLVPGTHRKGAVR
TKVKRQNKNVPSPRFSHAAVIMRQYLYIFSGSNSEFASGSTYNDIYRLDL
SSHTWERVQANGLLPAPRECCTLVGYSTSKLPSPIPPPPHINDKGLLIMY
GGWCQPPLDNRIRVDARFFEDTQIFHLNDLRWERLKIASPPPARAGHSAS
IVGDKMIIFGGSQRSDRLNDIWVFDINTLTWRHQYIRGTKPRERFGHSQF
TLNEKAMIVLGGCGGPNELFADAWVLDVQTWNWIQIKIEGAIYEPPELWC
HASVLVHQDIIVFSEEKKCPHCACPIQNYKVSEFKPDANAATCSCGRRKP
EDMISLYDNHLQMYTLDCSSLFTNSKCRWLPCQYLAPAPITRKLFTASLG
LNEILLFGGLSNLYRNESPRSDDCTIAVRAKPSPS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031820XLOC_031820Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050226TCONS_00050226Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR015916Gal_Oxidase_b-propeller
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 21..62
e-value: 4.4E-6
score: 36.2
IPR001810F-box domainPFAMPF12937F-box-likecoord: 19..55
e-value: 1.7E-7
score: 30.9
IPR001810F-box domainPROSITEPS50181FBOXcoord: 15..67
score: 10.769
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 263..286
coord: 4..67
IPR015916Galactose oxidase, beta-propellerGENE3D2.130.10.80coord: 71..178
e-value: 3.4E-13
score: 48.7
coord: 179..482
e-value: 7.3E-42
score: 143.1
NoneNo IPR availableGENE3D1.20.1280.50coord: 13..56
e-value: 3.2E-8
score: 32.6
NoneNo IPR availablePFAMPF13418Kelch_4coord: 243..282
e-value: 1.3E-9
score: 37.8
NoneNo IPR availablePFAMPF13854Kelch_5coord: 110..153
e-value: 1.9E-9
score: 37.2
NoneNo IPR availableSUPERFAMILY117281Kelch motifcoord: 106..366

Blast
[Close]
BLAST of TCONS_00050226-protein vs. Swiss-Prot (Human)
Match: FBX42 (F-box only protein 42 OS=Homo sapiens GN=FBXO42 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.577e-63
Identity = 130/380 (34.21%), Postives = 195/380 (51.32%), Query Frame = 0 
Query:    3 EIIMEEDNEE---LEWDFFNH------LPEELILKVLSYLSPYTDTKTAKLVNRRWNRLISSIERHNDRVFHEAIRTSNIMWQIHKLRSYDITDTLVPGTHRKGAVRTKVKRQNKNVPSPRFSHAAVI--MRQYLYIFSGSNSEFASGSTYNDIYRLDLSSHTWERVQANGLLPAPRECCTLVGYSTSKLPSPIPPPPHINDKGLLIMYGGWCQP---PLDNRIRVDARFFEDTQIFHLNDLRWERLKIASPPPARAGHSASIVGDKMIIFGGSQRSDRL-NDIWVFDINTLTWRHQYIRGTKPRERFGHSQFTLNEKAMIVLGGCGGPNELFADAWVLDVQT--WNWIQIKIEGAIYEPPELWCHASVLVHQDIIVFSE 365
            E  M++D E    LE +   H      LPEE++  +LS+LSPY + KTA LV ++W RLI  +       F +A++  NI W+    R+Y    T +                     + RFSH+A      Q +Y+F G  ++ +  + +ND++RLDL+S  W R  A+G  P+P+   TLV Y                 K LL+++GGW +P   PL        RFF++   +  +   W  +     PP  AGHS+ ++ DKMI+FGGS  S ++ ND+WV D+    W    I G  P  R G SQ  +++  +++LGGCGGPN LF DAW+L + +  W W  +K+E   +  PELWCH +  V Q ++VFS+
Sbjct:   23 EGTMDQDEEPHPVLEAEETRHNRSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWES---RTYPYPGTPI---------------------TQRFSHSACYYDANQSMYVFGGC-TQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVY-----------------KDLLVLFGGWTRPSPYPLHQ----PERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQ 356
The following BLAST results are available for this feature:
BLAST of TCONS_00050226-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX423.577e-6334.21F-box only protein 42 OS=Homo sapiens GN=FBXO42 PE... [more]
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