TCONS_00050250-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050250-protein
Unique NameTCONS_00050250-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1136

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050250-protein ID=TCONS_00050250-protein|Name=TCONS_00050250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1136bp
MDLGFLVNYYDTVTNETKEGMLRQFVIDLASSFDISKTTTHFSFIPFSSF
PGDFDVNQWFNSPVVAGLSSGDKKAQKAYLENLIMPDRDGTRGQSQVGRA
LQKARDKMFVASSGMRNTTVNVLLMITDGKENPGSFIDEPPSTHIKALQD
QGIQIYVAAVGSNLVESNLQSYTSTDRIFKSQTYTEALQKQIIEAICKVP
AEWAPWGQWSSCSATCGNGTRTRTRDCMSGNPGDGNCIPASANQEQDACY
LAPCLTPCPVKVDLAFIVDFSLSVNDGRTEHEHFLDMQDFIARTATIFDV
APGNTQFSYIPFSTVANDLPHQWFNNPDFQKVKSGDKAEQEKYVMNVVKP
LENDANMVGGYTSMNRALKLADEKMFNTAYGMRESVKKILILLTDGREQE
PQESNTYLKNIKDRGVEIISVAVGTEATINRTRLEELATNPGDVYVVSTY
GNFKDRMEVIATAMCTSAEAPAATLAPTTTLAPTTTTLAPTTTLAPTTTS
TTPYTPYHCGREIDVILLIDGSTXTSTTPYTPYHCGREIDVILLIDGSTS
VKPHWDTIKTFITNLLERFDIGDDAAHFAIALYSSDNHQSLVHPLSGFKD
SLAFSIFEMEPLEGSTRIDSALNYANDHIVKTQPDSRKNILDVVVLVTDG
ESDPASKDKLEPAATALKDSGTHIISVGLGKETSFDELRKIANSREAVFV
LEDYDQISSYVDTLAKGICEGSISSSGGTVQHNGYMCEPTMSIKFDLVCD
KTLFDESRSGNNGKMIGQTTLSSNNAVCKNKIVLATGGAIQLDGSNFKNK
PLDGLTISSWINLHRAGHAQSIFSVLSAKKEEQYALEITSNGAVHFAINY
GAKPVFVMNSINNMFNFEEWVHVAVTYNLKHNKGNIYINAKALADNQYTN
DHVTADLPLLPSDWSGHSAFGHVGDEASKQVVGGSLDEIYIFPCALDAMD
INSIKSHCDRYEPRVRAHGGIKYELFEDTTYSTPDEIVKSLEGKTPLTTL
YQATFKAPPSNLLGAALDKIGTRKFQARLSGYFYPPITAEYVLKFSSDNK
GMLFMNTDTPSLPSTIQLKQSTTSGTSTQVHAINMTAGVPFFIALYQDSS
DKKFNAQVGVEARCSNGVGILDDDVILKKDLVYEMP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031831XLOC_031831Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050250TCONS_00050250Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR000884TSP1_rpt
IPR008979Galactose-bd-like
IPR013320ConA-like_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 261..464
e-value: 4.3E-21
score: 86.1
coord: 1..197
e-value: 9.8E-7
score: 38.4
coord: 538..716
e-value: 6.8E-27
score: 105.3
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 14..199
e-value: 9.7E-16
score: 57.6
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 22..189
e-value: 2.3E-16
score: 60.5
coord: 540..710
e-value: 3.3E-29
score: 102.3
coord: 263..454
e-value: 7.0E-19
score: 68.7
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 526..724
e-value: 1.5E-29
score: 102.8
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 258..479
e-value: 1.1E-24
score: 86.9
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 2..196
score: 19.428
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 263..460
score: 23.126
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 540..714
score: 26.49
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 2..196
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 524..720
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 230..466
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 203..259
e-value: 3.1E-13
score: 60.0
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 205..254
e-value: 1.5E-8
score: 34.6
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 200..257
e-value: 1.1E-11
score: 44.4
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 200..255
score: 12.707
NoneNo IPR availableGENE3D2.60.120.200coord: 736..962
e-value: 7.3E-22
score: 77.9
NoneNo IPR availablePFAMPF13385Laminin_G_3coord: 787..951
e-value: 3.0E-15
score: 56.6
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 1..175
e-value: 1.55479E-14
score: 71.939
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 262..447
e-value: 6.03854E-22
score: 93.5102
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 539..701
e-value: 3.01886E-27
score: 109.303
IPR008979Galactose-binding domain-likeGENE3D2.60.120.260coord: 963..1118
e-value: 1.2E-7
score: 31.1
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 741..955

Blast
[Close]
BLAST of TCONS_00050250-protein vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 4.826e-16
Identity = 56/185 (30.27%), Postives = 94/185 (50.81%), Query Frame = 0 
Query:  538 EIDVILLIDGSTSV-KPHWDTIKTFITNLLERFDIGDDAAHFAIALYSSDNHQSLVHPLSGFKDSLAFSIFEMEPLEGSTRIDSALNYANDHIVKTQPDSRKNILDVVVLVTDGESDPASKDKLEPAATALKDSGTHIISVGLGKETSFDELRKIANSRE--AVFVLEDYDQISSYVDTLAKGIC 719
            E D++LL+DGS S+ + ++ T+++FI+ ++E FDIG      A+A YS D            K SL  ++  +    G+T    ALN+      +TQ   R     + VL+TDG+    S+D +E  +  LKD G  + ++G+ K     EL+ IA   +    + + D++ +S  VD L   +C
Sbjct: 1197 EADIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGK----SQDDVEAPSKKLKDEGVELFAIGI-KNADEVELKMIATDPDDTHAYNVADFESLSRIVDDLTINLC 1376
The following BLAST results are available for this feature:
BLAST of TCONS_00050250-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COCA14.826e-1630.27Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL... [more]
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