TCONS_00050261-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050261-protein
Unique NameTCONS_00050261-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050261-protein ID=TCONS_00050261-protein|Name=TCONS_00050261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
MATAQDTREAYIKVCMEKGVDINNEVMFLINRMEELNEHGEPSPHIMRLH
GNKRNDQNEMYRRRIDDNELEIFTLLFTGNTYLVGIDLGYNLITDEGAKL
IGKLLEETPSLETLILSYNDIGVSGATVIAKGIQMNETLTCLKMDGNKFG
RVGGLAIAGALQVNTTLEELDITNTEQDTQSLIALATVLKSNCHLKKLVI
GRPLLHSKQEDTTIHFARLLEVNRSIKEIHLRNHGMVNFGVEQIVNHIMD
NMTLLHLDVSCNQLSRDGMESIAKYLKSNPPLRILNVGYNRAEDDGAIVL
SNALSHGNINLETLVIRNNSLTGKGLCALAKSLTLNTTLTQLYVWGNELD
TPACQAFRGLLTGVIPRLAPNDTDIKSYVVDGVPRLAQVACPY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031834XLOC_031834Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050261TCONS_00050261Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 164..191
e-value: 15.0
score: 8.9
coord: 251..278
e-value: 0.95
score: 17.3
coord: 136..163
e-value: 22.0
score: 7.6
coord: 308..335
e-value: 12.0
score: 9.4
coord: 279..306
e-value: 0.5
score: 19.2
coord: 108..135
e-value: 5.3E-4
score: 29.3
coord: 80..107
e-value: 0.37
score: 19.9
coord: 336..363
e-value: 61.0
score: 4.5
NoneNo IPR availableGENE3D3.40.50.10480coord: 197..285
e-value: 1.3E-13
score: 50.3
NoneNo IPR availableGENE3D3.40.50.2000coord: 123..196
e-value: 2.9E-17
score: 62.6
coord: 286..369
e-value: 6.4E-14
score: 51.6
coord: 50..122
e-value: 3.1E-13
score: 49.4
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 63..368
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 308..330
e-value: 1.1
score: 9.4
coord: 109..130
e-value: 0.012
score: 15.5
coord: 80..101
e-value: 0.029
score: 14.3
coord: 136..158
e-value: 0.67
score: 10.1
coord: 251..273
e-value: 2.1E-4
score: 21.0

Blast
[Close]
BLAST of TCONS_00050261-protein vs. Swiss-Prot (Human)
Match: LRC34 (Leucine-rich repeat-containing protein 34 OS=Homo sapiens GN=LRRC34 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 9.218e-66
Identity = 126/383 (32.90%), Postives = 212/383 (55.35%), Query Frame = 0 
Query:    8 REAYIKVCMEKGVDINNEVMFLINRMEELNEHGEPSPHIMRLHGNKRNDQNEMYRRRIDDNELEIFTLLFTGNTYLVGIDLGYNLITDEGAKLIGKLLEETPSLETLILSYNDIGVSGATVIAKGIQMNETLTCLKMDGNKFGRVGGLAIAGALQVNTTLEELDITNTEQDTQSLIALATVLKSNCHLKKLVIGRPLLHSKQEDTTIHFARLLEVNRSIKEIHLRNHGMVNFGVEQIVNHIMDNMTLLHLDVSCNQLSRDGMESIAKYLKSNPPLRILNVGYNRAEDDGAIVLSNALSHGNINLETLVIRNNSLTGKGLCALAKSLTLNTTLTQLYVWGNELDTPACQAFRGLLTGVIPRLAPNDTDIKSYVVDGVPRLAQVA 390
            ++ Y  +CMEK   IN  ++ ++  ++E  + G  +   + + GN R    E    R+   +  I + +     Y+ G+D+GYNL+ D GA    KLL++  +L  L L +NDIG  G  +IAK +  N TL  L+M GNK    GG+  A  LQ+N++LE+LD+                   +C L              E++T+H  R+L+ N  +  +H+  H + N G++Q+ + +  N +L +LDVSCN+++ DGM  +A  LKSN  L ++++ +NR E+ GA  LS  L+  N +L+ L + +N++ G+GL AL++S+  N T + +Y+WGN+ D   C A+  L+   +  L P++TD++ +VVDG   LA+V+
Sbjct:   41 QKHYSNLCMEKSQKINPFILHILQEVDEEIKKGLAAGITLNIAGNNRLVPVE----RVTGEDFWILSKILKNCLYINGLDVGYNLLCDVGAYYAAKLLQKQLNLIYLNLMFNDIGPEGGELIAKVLHKNRTLKYLRMTGNKIENKGGMFFAAMLQINSSLEKLDL------------------GDCDL--------------EESTVHVGRMLKENHCLVALHMCKHDIKNSGIQQLCDALYLNSSLRYLDVSCNKITHDGMVYLADVLKSNTTLEVIDLSFNRIENAGANYLSETLTSHNRSLKALSVVSNNIEGEGLVALSQSMKTNLTFSHIYIWGNKFDEATCIAYSDLIQ--MGCLKPDNTDVEPFVVDGRVYLAEVS 385
The following BLAST results are available for this feature:
BLAST of TCONS_00050261-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC349.218e-6632.90Leucine-rich repeat-containing protein 34 OS=Homo ... [more]
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