TCONS_00050335-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050335-protein
Unique NameTCONS_00050335-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050335-protein ID=TCONS_00050335-protein|Name=TCONS_00050335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MAGHFSEFGMMPEMVKGTEDMGWMLPTDIQAEAIPMILGGGDVLMAAETG
SGKTGAFCLPVIQIVYENLVTVKEGKSTNQKMNNNKWEMNKFDREPGLAI
GEDGLLCQARQQRWQGARSTLGVVEGKYYYEVQITDEGLCRVGFSTDTAV
FDVGTDNESFGFGGTGKKSYRRQFDTYGEPFGINDILGCYLNLEAGSISF
SKNGNVFEKAFDIPKNLDNRAFFASVTLKNAELHFNFGNKPFKHPPAGHF
QALCKATKTIQSRRLSAPKKFTNICSPAALIMETHDQITLF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031867XLOC_031867Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050335TCONS_00050335Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003877SPRY_dom
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR001870B30.2/SPRY
IPR013320ConA-like_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003877SPRY domainSMARTSM00449SPRY_3coord: 125..241
e-value: 5.1E-28
score: 109.1
IPR003877SPRY domainPFAMPF00622SPRYcoord: 127..239
e-value: 7.7E-21
score: 74.3
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 27..78
e-value: 4.0E-18
score: 65.7
NoneNo IPR availableGENE3D3.40.50.300coord: 3..291
e-value: 1.1E-15
score: 57.0
NoneNo IPR availableCDDcd12873SPRY_DDX1coord: 89..241
e-value: 7.11664E-83
score: 247.872
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 3..31
score: 9.282
IPR001870B30.2/SPRY domainPROSITEPS50188B302_SPRYcoord: 67..242
score: 19.29
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 83..245
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..70

Blast
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BLAST of TCONS_00050335-protein vs. Swiss-Prot (Human)
Match: DDX1 (ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN=DDX1 PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 2.233e-89
Identity = 156/292 (53.42%), Postives = 202/292 (69.18%), Query Frame = 0 
Query:    5 FSEFGMMPEMVKGTEDMGWMLPTDIQAEAIPMILGGGDVLMAAETGSGKTGAFCLPVIQIVYENLVTVKEGKSTNQKMNN-----NKWEMNKFDREPGLAIGEDGLLCQARQ-QRWQGARSTLGVVEGKYYYEVQITDEGLCRVGFSTDTAVFDVGTDNESFGFGGTGKKSYRRQFDTYGEPFGINDILGCYLNLEAGSISFSKNGNVFEKAFDIPKNLDNRAFFASVTLKNAELHFNFGNKPFKHPPAGHFQALCKATK--TIQSR-----RLSAPKKFTNICSPAALIME 283
            FSE G+MPE+ +  E+M W+LPTDIQAE+IP+ILGGGDVLMAAETGSGKTGAF +PVIQIVYE L   +EGK     +       NKW+MN +DR    AIG DGL CQ+R+ + W G R+T G+++GK+YYEV   D+GLCRVG+ST  A  D+GTD   FGFGGTGKKS+ +QFD YGE F ++D +GCYL+++ G + FSKNG     AF+IP ++ N+A F +  LKNAEL FNFG + FK PP   F AL KA     ++S+     +++  K   N  +P ALI+E
Sbjct:    4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVE 293
The following BLAST results are available for this feature:
BLAST of TCONS_00050335-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX12.233e-8953.42ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN... [more]
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