TCONS_00050336-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050336-protein
Unique NameTCONS_00050336-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050336-protein ID=TCONS_00050336-protein|Name=TCONS_00050336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MARKLSVGAVGGLLGVAASSLLLMKTKNETVWENVTMPLIRLLDAEVAHR
LSVRLASRGLVPSFPTSAADKEVLKTKVFGLDFDSPVGLAAGFDKNAECV
DGMLKMGFDFVEVGSITPEPQEGNAKPRVFRLVEDEAVINRYGFNSFGMD
TAYSNLTKRRNKPGIVSINLGKNKTTENAVDDYVKGVLKLGELANILVIN
VSSPNTPGLRKMQGRQELAELIEKVLEAKKTLSNNPPLVVKVAPDLTIED
KKDIAAVVTNAKTRVDGLVVTNTTITRPESLQAVDKTQKGGLSGKPLKEL
STQCIKDMFDLTEGNIPIIGVGGISTGEDAYEKICSGASLIQLYSSLSTH
GPPVVGKIKRELAKLLRDDGFASVADAVGCDVIPFGCPGTPTAKEQMHQI
NFVEAPK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031868XLOC_031868Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050336TCONS_00050336Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005720Dihydroorotate_DH
IPR013785Aldolase_TIM
IPR005719Dihydroorotate_DH_2
IPR001295Dihydroorotate_DH_CS
Vocabulary: Molecular Function
TermDefinition
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0003824catalytic activity
GO:0004152dihydroorotate dehydrogenase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006207'de novo' pyrimidine nucleobase biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016020 membrane
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004152 dihydroorotate dehydrogenase activity
molecular_function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 215..235
NoneNo IPR availableSUPERFAMILY51395FMN-linked oxidoreductasescoord: 35..381
IPR005720Dihydroorotate dehydrogenase domainPFAMPF01180DHO_dhcoord: 74..366
e-value: 7.6E-101
score: 337.1
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 26..384
e-value: 7.6E-85
score: 284.4
IPR005719Dihydroorotate dehydrogenase, class 2TIGRFAMTIGR01036TIGR01036coord: 39..381
e-value: 5.8E-124
score: 411.4
IPR005719Dihydroorotate dehydrogenase, class 2CDDcd04738DHOD_2_likecoord: 37..362
e-value: 6.77898E-177
score: 498.562
IPR001295Dihydroorotate dehydrogenase, conserved sitePROSITEPS00912DHODEHASE_2coord: 318..338

Blast
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BLAST of TCONS_00050336-protein vs. Swiss-Prot (Human)
Match: PYRD (Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Homo sapiens GN=DHODH PE=1 SV=3)

HSP 1 Score: 399.053 bits (1024), Expect = 1.176e-137
Identity = 203/381 (53.28%), Postives = 272/381 (71.39%), Query Frame = 0 
Query:   11 GGLLGVAASSLLLMKTKNETVWENVTMPLIR-LLDAEVAHRLSVRLASRGLVPSFPTSAADKEVLKTKVFGLDFDSPVGLAAGFDKNAECVDGMLKMGFDFVEVGSITPEPQEGNAKPRVFRLVEDEAVINRYGFNSFGMDTAYSNLTKRRNKPGIVS-------INLGKNKTTENAVDDYVKGVLKLGELANILVINVSSPNTPGLRKMQGRQELAELIEKVLEAKKTLS--NNPPLVVKVAPDLTIEDKKDIAAVVTNAKTRVDGLVVTNTTITRPESLQAVDKTQKGGLSGKPLKELSTQCIKDMFDLTEGNIPIIGVGGISTGEDAYEKICSGASLIQLYSSLSTHGPPVVGKIKRELAKLLRDDGFASVADAVGCD 381
            GGLL  +     LM T +E  +    MP ++ LLD E AHRL+VR  S GL+P       D ++L+ +V G  F +PVG+AAGFDK+ E VDG+ KMGF FVE+GS+TP+PQEGN +PRVFRL ED+AVINRYGFNS G+      L  R+ K   ++       +NLGKNKT+ +A +DY +GV  LG LA+ LV+NVSSPNT GLR +QG+ EL  L+ KVL+ +  L   + P ++VK+APDLT +DK+DIA+VV      +DGL+VTNTT++RP  LQ   +++ GGLSGKPL++LSTQ I++M+ LT+G +PIIGVGG+S+G+DA EKI +GASL+QLY++L+  GPPVVGK+KREL  LL++ GF  V DA+G D
Sbjct:   20 GGLLFAS----YLMATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPR--ARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELG--IDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGAD 392
The following BLAST results are available for this feature:
BLAST of TCONS_00050336-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PYRD1.176e-13753.28Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
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