TCONS_00050349-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050349-protein
Unique NameTCONS_00050349-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length171

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050349-protein ID=TCONS_00050349-protein|Name=TCONS_00050349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MPNSPQKKGSPTPAESAPRILRFLVRIWGVVAGLCMLSTGLFAMITITGK
CFVSGIIQIVFGLLVLCLEAPMLCQFSEIATKLSDWVESHFRFWLRAALY
LLAGVPPIVMCLELSTFIGSGSCVVLAALYGTLAIGRKGGDVEKKSNDDV
EMKATLMDNQGDPNDIGGAFH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031877XLOC_031877Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050349TCONS_00050349Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019365TVP18/Ca-channel_flower
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019365TVP18/Calcium channel flowerSMARTSM01077Cg6151_P_2coord: 28..138
e-value: 2.2E-16
score: 70.4
IPR019365TVP18/Calcium channel flowerPFAMPF10233Cg6151-Pcoord: 28..138
e-value: 7.8E-23
score: 80.8

Blast
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BLAST of TCONS_00050349-protein vs. Swiss-Prot (Human)
Match: FLOWR (Calcium channel flower homolog OS=Homo sapiens GN=CACFD1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.173e-16
Identity = 45/141 (31.91%), Postives = 68/141 (48.23%), Query Frame = 0 
Query:    2 PNSPQKKGSPTPAESAPRILRFLVRIWGVVAGLCMLSTGLFAMITITGKCFVSGIIQIVFGLLVLCLEAPMLCQFSEIATKLSDWVESHFRFWLRAALYLLAGVPPIVMCLELSTFIGSGSCVVLAALYGTLAIGRKGGDV 142
            P +      P   E      R+L R+ GV+  +    +GLF  ITI      +G+  I+   ++L  EAP  CQF E A  +++ V+   R W +A  Y    V PIV+ L L+T +G+        LYG  A+G+KG  +
Sbjct:    8 PGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAAGVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVD-RLRSWQKAVFYCGMAVVPIVISLTLTTLLGNAIAFATGVLYGLSALGKKGDAI 147
The following BLAST results are available for this feature:
BLAST of TCONS_00050349-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLOWR1.173e-1631.91Calcium channel flower homolog OS=Homo sapiens GN=... [more]
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