TCONS_00050415-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050415-protein
Unique NameTCONS_00050415-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050415-protein ID=TCONS_00050415-protein|Name=TCONS_00050415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MFEAKLADGTPLKKLFEAMKDLFTNVNFECNENGISCQAMDSSHVCLCSV
LIRHDAFEPYRCDRSVTLGMNCGTMAKILRCAGNDESICLTAEDTADVVS
LIFEKANQERVSKFEMKLMDIDSEHLGIPDQDYDAVVKLPSQELSRIIRD
LSQFGDTVTIACTKDGVRFSCNGDSGSGSITLRNSSSVDSNDDNEVSIEL
NEAVTQTYAMRFLILFGKATSLSKSCVLSICQDIPLVAEYKIGDCGHIRY
FLAPKIDDNEEMDEGEDEGANENTEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031923XLOC_031923Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050415TCONS_00050415Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000730Pr_cel_nuc_antig
IPR022649Pr_cel_nuc_antig_C
IPR022648Pr_cel_nuc_antig_N
Vocabulary: Biological Process
TermDefinition
GO:0006275regulation of DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0030337DNA polymerase processivity factor activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006275 regulation of DNA replication
molecular_function GO:0003677 DNA binding
molecular_function GO:0030337 DNA polymerase processivity factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000730Proliferating cell nuclear antigen, PCNAPRINTSPR00339PCNACYCLINcoord: 242..259
score: 55.03
coord: 110..132
score: 65.42
coord: 204..218
score: 41.9
coord: 10..29
score: 43.1
coord: 34..52
score: 59.15
coord: 56..80
score: 52.95
IPR000730Proliferating cell nuclear antigen, PCNATIGRFAMTIGR00590TIGR00590coord: 1..260
e-value: 1.2E-110
score: 367.0
IPR000730Proliferating cell nuclear antigen, PCNAHAMAPMF_00317DNApol_clamp_archcoord: 2..256
score: 18.338
IPR022649Proliferating cell nuclear antigen, PCNA, C-terminalPFAMPF02747PCNA_Ccoord: 127..255
e-value: 3.4E-46
score: 156.5
NoneNo IPR availableGENE3D3.70.10.10coord: 1..264
e-value: 6.0E-74
score: 247.9
NoneNo IPR availableCDDcd00577PCNAcoord: 4..256
e-value: 2.89678E-83
score: 251.78
NoneNo IPR availableSUPERFAMILY55979DNA clampcoord: 1..126
NoneNo IPR availableSUPERFAMILY55979DNA clampcoord: 127..259
IPR022648Proliferating cell nuclear antigen, PCNA, N-terminalPFAMPF00705PCNA_Ncoord: 1..124
e-value: 5.8E-49
score: 164.9

Blast
[Close]
BLAST of TCONS_00050415-protein vs. Swiss-Prot (Human)
Match: PCNA (Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.917e-102
Identity = 137/260 (52.69%), Postives = 193/260 (74.23%), Query Frame = 0 
Query:    1 MFEAKLADGTPLKKLFEAMKDLFTNVNFECNENGISCQAMDSSHVCLCSVLIRHDAFEPYRCDRSVTLGMNCGTMAKILRCAGNDESICLTAEDTADVVSLIFEKANQERVSKFEMKLMDIDSEHLGIPDQDYDAVVKLPSQELSRIIRDLSQFGDTVTIACTKDGVRFSCNGDSGSGSITLRNSSSVDSNDDNEVSIELNEAVTQTYAMRFLILFGKATSLSKSCVLSICQDIPLVAEYKIGDCGHIRYFLAPKIDDNE 260
            MFEA+L  G+ LKK+ EA+KDL     ++ + +G++ Q+MDSSHV L  + +R + F+ YRCDR++ +G+N  +M+KIL+CAGN++ I L AED AD ++L+FE  NQE+VS +EMKLMD+D E LGIP+Q+Y  VVK+PS E +RI RDLS  GD V I+C KDGV+FS +G+ G+G+I L  +S+VD  ++  V+IE+NE V  T+A+R+L  F KAT LS +  LS+  D+PLV EYKI D GH++Y+LAPKI+D E
Sbjct:    1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVD-KEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259
The following BLAST results are available for this feature:
BLAST of TCONS_00050415-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCNA2.917e-10252.69Proliferating cell nuclear antigen OS=Homo sapiens... [more]
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