TCONS_00050452-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050452-protein
Unique NameTCONS_00050452-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050452-protein ID=TCONS_00050452-protein|Name=TCONS_00050452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp
MATLVQNPPPSVTPAADAPPPQQQAQPTQQPQQHQQQQHHHHGGNYNQRQ
QFHHHQHQHHRPHHHHHRHPNFQHHHNRQHHHHHASYTAAVPMIFTQANG
STTTSTNLFKQINIIPGLDAENAIVDTGVRVFRPNTQVQTQTAPAEYDGK
RMRRSIQRRTVDYNASTIQLLKHRLYKRSILQKPIVQCDPLYYTDIVQPR
SLQHNPVNSVTSRFVRASTNKVRCPVFTVAWTPEGRRVLTGTSSGEFTLW
NGLTFNFETILQAHDSAVRAMEWSHNDMWLLSGDHNGIIKYWQSNMNNVK
LIQAHNDPIRGLSFCPTDNKFVTCSDDGLLKVWDFYRCLEERVLRGHGAD
VKCVGWHPSKSLVASGSKDSQQPLKLWDPRSASSLATMY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031953XLOC_031953Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050452TCONS_00050452Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 208..251
e-value: 1.0
score: 16.9
coord: 254..293
e-value: 1.3E-5
score: 34.7
coord: 337..378
e-value: 2.5E-6
score: 37.1
coord: 295..334
e-value: 1.2E-8
score: 44.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 342..370
e-value: 3.6E-4
score: 21.2
coord: 259..292
e-value: 9.6E-4
score: 19.8
coord: 298..334
e-value: 1.5E-5
score: 25.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 344..370
score: 8.67
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 261..293
score: 11.143
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 302..334
score: 13.449
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 226..251
score: 8.67
NoneNo IPR availableGENE3D1.10.10.670coord: 330..389
e-value: 1.6E-14
score: 53.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..85
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 23..329
e-value: 5.6E-31
score: 107.5
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 219..387
score: 24.363
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 218..388

Blast
[Close]
BLAST of TCONS_00050452-protein vs. Swiss-Prot (Human)
Match: WDR33 (pre-mRNA 3' end processing protein WDR33 OS=Homo sapiens GN=WDR33 PE=1 SV=2)

HSP 1 Score: 376.711 bits (966), Expect = 8.716e-120
Identity = 164/257 (63.81%), Postives = 203/257 (78.99%), Query Frame = 0 
Query:  133 RPNTQVQTQTAPAEYDGKRMRRSIQRRTVDYNASTIQLLKHRLYKRSILQKPIVQCDPLYYTDIVQPRSLQHNPVNSVTSRFVRASTNKVRCPVFTVAWTPEGRRVLTGTSSGEFTLWNGLTFNFETILQAHDSAVRAMEWSHNDMWLLSGDHNGIIKYWQSNMNNVKLIQAHNDPIRGLSFCPTDNKFVTCSDDGLLKVWDFYRCLEERVLRGHGADVKCVGWHPSKSLVASGSKDSQQPLKLWDPRSASSLATMY 389
            RP+   Q       +DGKRMR+++ R+T+DYN S I+ L++R+++R       +Q D  YY D+V P  + +NP+N+VT++FVR STNKV+CPVF V WTPEGRR++TG SSGEFTLWNGLTFNFETILQAHDS VRAM WSHNDMW+L+ DH G +KYWQSNMNNVK+ QAH + IR  SF PTDNKF TCSDDG +++WDF RC EER+LRGHGADVKCV WHP+K LV SGSKDSQQP+K WDP++  SLAT++
Sbjct:   29 RPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLH 285
The following BLAST results are available for this feature:
BLAST of TCONS_00050452-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR338.716e-12063.81pre-mRNA 3' end processing protein WDR33 OS=Homo s... [more]
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