TCONS_00050673-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050673-protein
Unique Name	TCONS_00050673-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	378

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050673-protein ID=TCONS_00050673-protein|Name=TCONS_00050673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MAGANSHKNMMDTQKHLDQQIKKLREFSLGLKGVQVLIEKTKSRFNPWQS
DSEQIKNIFDVQIEVADSPCIWEFNLEHADHFPDVIFAEEDEEFNPDITS
YTSLSDWDIKKDTKLQEFVLELSRSYVQYQKEKLQCYDQIKEEFQIFFKD
HSELANECELQIAKGGQKAHTYSDIITFLVPIKCDCSDVPPTFKKKNSGK
DVSYLHIKYESPNQTSVSSKLILNNSLISVLGGSSNLRIPSYGSLSLSKY
VEKVTKLVQNTVEMVSQGYQMRRHFISLLIKELGSSAIVEYDTKLFLEAC
FMVEREDGFACLLLVSLTRLYSEKSPKMVLQSIYNVDGASKLPKLQVPLE
GCFQDVAGAGDGVGECNENEDIRVAFIR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_032103	XLOC_032103	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050673	TCONS_00050673	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010358	BRE

Vocabulary: **Cellular Component**
Term	Definition
GO:0070552	BRISC complex
GO:0070531	BRCA1-A complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0070531	BRCA1-A complex
cellular_component	GO:0070552	BRISC complex

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010358	BRCA1-A complex subunit BRE	PFAM	PF06113	BRE	coord: 24..335 e-value: 5.4E-47 score: 160.1

Blast

[Close]

BLAST of TCONS_00050673-protein vs. Swiss-Prot (Human)
Match: BABA2 (BRISC and BRCA1-A complex member 2 OS=Homo sapiens GN=BABAM2 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 4.574e-32
Identity = 86/290 (29.66%), Postives = 143/290 (49.31%), Query Frame = 0

Query:   59 FDVQIEVADSPCIWE--FNLEHADHFPDVIFAEEDEEFNPDITSYTSLSDWDIKKDTKLQEFVLELSRSYVQYQKEKLQCYDQIKEEFQIFFKDHSELANECELQIAKGGQKAHTYSDIITFLVPIKCDCSDVPPTFKK---KNSGKDVSYLHIKYESPNQTSVSSKLILNNSLISVLGGSSNLRIPSY-GSLSLSKYVEKVTKLVQNTVEMVSQGYQMRRHFISLLIKELGSSAIVEYDTKLFLEACFMVEREDGFACLLLVSLTRLYSEKSPKMVLQSIYNVDGASKL 342
            F + I  A     W+  FN ++ +  PD IF E D EF PD ++  +L+ W+      L   V EL + Y Q+Q  +L+   ++  E+Q   ++     N   ++I  G +   T      FL+ +  D S++P    K   ++ G+DV+ L + +E    T V  KL L+  +   LGGSS L IP++ G   L  YV +V  L+ N V+ V QGY  RR +I+  +   G + +VEYD + F +   ++  +D F  L+ + L   +    P +  QS+Y+   + +L
Sbjct:   56 FKLHIPYAGETLKWDIIFNAQYPELPPDFIFGE-DAEFLPDPSALQNLASWNPSNPECLLLVVKELVQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGEN---MEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFG-TGVVEYDAEGFTKLTLLLMWKD-FCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQL 339

The following BLAST results are available for this feature:

BLAST of TCONS_00050673-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050673-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BABA2	4.574e-32	29.66	BRISC and BRCA1-A complex member 2 OS=Homo sapiens...	[more]

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TCONS_00050673-protein (polypeptide) - C. hemisphaerica