TCONS_00051434-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051434-protein
Unique NameTCONS_00051434-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051434-protein ID=TCONS_00051434-protein|Name=TCONS_00051434-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
XAFSRRIQCLKIESNSRMTDASIKLLVKNCSELRYLYFVDIQRATDMSLK
ALSQCRSLGVLNLADCVRVSDTGVRYIVEGLPGSKIRELNLTNCIRVSDV
SLLRISQRCFSLMYANFSYCEHVTDAGIELIAVLPSLTSLDVSGCNITDT
GVVALGNNSKIRDLMLSECCSVTDVGLQKLFPNIKGLENLDISHLNQLSD
QTLKSLAFCCRRMRCLNVAGCPQLTDQGIQYLSGVCQFIERLDASACFKL
TDRSLRFLRKGCVNIKLLMLLYCKNISKIAVTKYQYRIRGKIFHSSEETF
VYLGNHVTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032588XLOC_032588Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051434TCONS_00051434Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 83..108
e-value: 0.014
score: 24.6
coord: 236..261
e-value: 4.1
score: 16.4
coord: 184..209
e-value: 34.0
score: 10.4
coord: 262..287
e-value: 120.0
score: 6.1
coord: 109..134
e-value: 0.52
score: 19.4
coord: 4..29
e-value: 240.0
score: 3.8
coord: 55..80
e-value: 0.041
score: 23.0
coord: 210..235
e-value: 0.14
score: 21.2
coord: 159..183
e-value: 47.0
score: 9.3
coord: 135..158
e-value: 0.24
score: 20.5
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 135..155
e-value: 4.5E-6
score: 26.2
coord: 210..233
e-value: 0.4
score: 10.8
coord: 157..180
e-value: 0.33
score: 11.0
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 90..181
e-value: 1.8E-18
score: 65.8
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 3..89
e-value: 1.5E-9
score: 36.8
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 182..285
e-value: 1.1E-12
score: 46.9
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 6..274

Blast
[Close]
BLAST of TCONS_00051434-protein vs. Swiss-Prot (Human)
Match: FXL13 (F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 4.840e-71
Identity = 121/307 (39.41%), Postives = 198/307 (64.50%), Query Frame = 0 
Query:    6 RIQCLKIESNSRMTDASIKLLVKNCSELRYLYFVDIQRATDMSLKALSQCRSLGVLNLADCVRVSDTGVRYIVEGLPGSKIRELNLTNCIRVSDVSLLRISQRCFSLMYANFSYCEHVTDAGIELIAVLPSLTSLDVSGCNITDTGVVALGNNSKIRDLMLSECCSVTDVGLQKLFPNIKGLENLDISHLNQLSDQTLKSLAFCCRRMRCLNVAGCPQLTDQGIQYLSGVCQFIERLDASACFKLTDRSLRFLRKGCVNIKLLMLLYCKNISKIAVTKYQYRIRGKIFHSSEET--FVY--LGNHVT 308
            +++ ++ E N R+TDAS K + KN   L ++Y  D +  TD SL++LS  + L VLNLA+CVR+ D G++  ++G    +IRELNL+NC+R+SD S++++S+RC +L Y +   CEH+T  GI  I  + SL S+D+SG +I++ G+  L  + K+++L +SEC  +TD G+Q    +   LE+LD+S+ +QLSD  +K+LA  C  +  L++AGCP++TD  ++ LS  C ++  LD S C  LTD+ L  L+ GC  +++L + YC NISK A  +   +++ + +++++    F Y   GN VT
Sbjct:  401 KLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLILEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYCTNISKKAAQRMSSKVQQQEYNTNDPPRWFGYDREGNPVT 707

HSP 2 Score: 77.411 bits (189), Expect = 9.829e-16
Identity = 73/285 (25.61%), Postives = 128/285 (44.91%), Query Frame = 0 
Query:   48 SLKALSQCRSLGVLNLADCVRVSDTGVRYIVEGLPG-----------------------SKIRELNLTNCIRVSDVSL--LRISQRCFSLMYANFSYCEHVTDAGIELIAV------------LPSL---------------TSLDVSGC-NITDTGVVALGNNSKIRDLMLSECCSVTDVGLQKLFPNIKGLENLDISHLNQLSDQTLKSLAFCCRRMRCLNVAGCPQLTDQGI-QYLSGVCQF-IERLDASACFKLTDRSLRFLRKGCVNIKLLMLLYCKNIS 277
            + +++S CR+L  LN++DC   +D  +R+I EG PG                         ++ L+L  C R +D  L  L +   C  L+Y + S C  ++  G   IA             +P+L               TSL  +G  +I+D    AL    K+R +       VTD   + +  N   L ++ ++    ++D +L+SL+   +++  LN+A C ++ D G+ Q+L G     I  L+ S C +L+D S+  L + C N+  L L  C++++
Sbjct:  237 TFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALS-ACKLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLS-PLKQLTVLNLANCVRIGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLT 519
The following BLAST results are available for this feature:
BLAST of TCONS_00051434-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FXL134.840e-7139.41F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBX... [more]
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