TCONS_00052068-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052068-protein
Unique Name	TCONS_00052068-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	164

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052068-protein ID=TCONS_00052068-protein|Name=TCONS_00052068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
LLLSGFILSALSFMIAPNIYYHEISAGLLIFGAGLEGIAWAGFGVNHLDI
APQYAAILIGITNTCATVPNIIVPIVVGIISKTGERSDWMLVFYISGLTL
IVGTSFYIVFGSGEVQPWAGGVENEEGEKESLLNDFSTKEDMDEIENDNE
TKDVANENKIDKES

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_032976	XLOC_032976	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052068	TCONS_00052068	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR020846	MFS_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 1..161 e-value: 1.2E-11 score: 43.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..164
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 2..112

Blast

[Close]

BLAST of TCONS_00052068-protein vs. Swiss-Prot (Human)
Match: VGLU2 (Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.460e-26
Identity = 59/157 (37.58%), Postives = 87/157 (55.41%), Query Frame = 0

Query:    5 GFILSALSFMIAPNIYYHEISAGLLIFGAGLEGIAWAGFGVNHLDIAPQYAAILIGITNTCATVPNIIVPIVVGIISKTGERSDWMLVFYISGLTLIVGTSFYIVFGSGEVQPWAGGVENEEGEKESLLNDFSTKEDMDEIENDNETKDVANENKID 161
            GF + A   ++    +   ++   L+   G  G A +GF VNHLDIAP+YA+IL+GI+N   T+  ++ PI+VG ++K   R +W  VF I+ L    G  FY +F SGE QPWA   E  E EK   +++       DE+  D ET D+  +N I+
Sbjct:  392 GFGMEATLLLVVGYSHTRGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKNKSREEWQYVFLIAALVHYGGVIFYAIFASGEKQPWADPEETSE-EKCGFIHE-------DEL--DEETGDI-TQNYIN 537

The following BLAST results are available for this feature:

BLAST of TCONS_00052068-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052068-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VGLU2	3.460e-26	37.58	Vesicular glutamate transporter 2 OS=Homo sapiens ...	[more]

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TCONS_00052068-protein (polypeptide) - C. hemisphaerica