TCONS_00052129-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052129-protein
Unique NameTCONS_00052129-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052129-protein ID=TCONS_00052129-protein|Name=TCONS_00052129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MATRLDRLLVILDTGSTPVTRKAAAKQLGEIQKLHPHELQNLLGRVFVYL
RSKNWDTRVAAAHAIQAIAENVPEWNPDGLKIKPEEYCLLENVNLDGKLR
FEDFDINTVLERGEKLLGSAGEEYDFEDTILSGMSRSETIAHQRQQLKKK
LGFGGNMDLGFDSMLDDEDLVTTNNVGDGGGSKKVMSQLSTESAADIVAS
QIAAISSDGQMSSREKNRAKRKAKSLAKQRSKENENRSFDTGEGPAEKKQ
RRTQSVLVEQPSEDGKIMIDNVSDGTMSMDE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033011XLOC_033011Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052129TCONS_00052129Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 216..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..281
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 2..173
e-value: 2.4E-11
score: 42.4
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 8..77

Blast
[Close]
BLAST of TCONS_00052129-protein vs. Swiss-Prot (Human)
Match: BTAF1 (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 1.397e-66
Identity = 124/286 (43.36%), Postives = 182/286 (63.64%), Query Frame = 0 
Query:    2 ATRLDRLLVILDTGSTPVTRKAAAKQLGEIQKLHPHELQNLLGRVFVYLRSKNWDTRVAAAHAIQAIAENVPEWNP-DGLKIKPEEYCLLENVNLDGKLRFEDFDINTVLERGEKLLGSAGEEYDFEDTILSGMSRSETIAHQRQQLKKKLGF--GGNMDLGFDSMLDDEDLVTTNNVGDGGGSKKVMSQLSTESAADIVASQIAAISSDGQMSSREKNRAKRKAKSLAKQRSK---ENENRSFDTGEGPAEKKQRRTQSVLVEQPSEDGKIMIDNVSDGTMSMDE 281
             +RLDRL ++LDTG+TPVTRKAAA+QLGE+ KLHPHEL NLL +V +YLRS NWDTR+AA  A++AI +NVPEWNP    + +P     +E+     +L F+ FDI  +L+ G  LLGSAG E++ +D     +   E IA QR+ L+KKLG   G  + +  + + +DEDL  T        S   +++  T  AA+++ S+  A      MS+R+KN+AKR AK  AKQRS+   E   +S D+ +G  E+K+R+  +V++ Q + D K++IDN+ D +  ++E
Sbjct:    3 VSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRIAAGQAVEAIVKNVPEWNPVPRTRQEPTSESSMEDSPTTERLNFDRFDICRLLQHGASLLGSAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYTPT------SASFVNKQPTLQAAELIDSEFRA-----GMSNRQKNKAKRMAKLFAKQRSRDAVETNEKSNDSTDGEPEEKRRKIANVVINQSANDSKVLIDNIPDSSSLIEE 277
The following BLAST results are available for this feature:
BLAST of TCONS_00052129-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BTAF11.397e-6643.36TATA-binding protein-associated factor 172 OS=Homo... [more]
back to top